A bioinformatics pipeline to phase and impute genetic data
active 2024-01-30 → 2026-06-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 875 days from 2024-01-30 to 2026-06-22. Pushes: 129 total, peak 5 in a day. Pull requests: 245 total, peak 15 in a day. Issues: 162 total, peak 9 in a day. Comments: 751 total, peak 78 in a day. Stars: 27 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| LouisLeNezet | 1.2K | 89 | 174 | 491 |
| atrigila | 422 | 17 | 36 | 163 |
| maxulysse | 68 | 0 | 0 | 31 |
| nf-core-bot | 45 | 17 | 17 | 11 |
| mashehu | 28 | 1 | 1 | 16 |
| sofstam | 24 | 0 | 0 | 14 |
| hemanoel | 10 | 3 | 4 | 1 |
| gichas | 8 | 0 | 6 | 0 |
| nitzcovich | 6 | 0 | 0 | 2 |
| mrvictorica | 6 | 0 | 2 | 2 |
| mazzalab | 5 | 0 | 0 | 2 |
| JoseEspinosa | 5 | 2 | 0 | 0 |
| Lenbok | 5 | 0 | 0 | 2 |
| jfy133 | 5 | 0 | 0 | 2 |
| fbdtemme | 4 | 0 | 0 | 2 |
| matthdsm | 4 | 0 | 0 | 1 |
| mirpedrol | 3 | 0 | 2 | 1 |
| eugeniafontecha | 3 | 0 | 2 | 1 |
| SPPearce | 3 | 0 | 0 | 1 |
| pinin4fjords | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#290atrigila2026-05-24 18:21update test full profile
- Issue#116atrigila2026-05-24 18:20Add QUILT2
- Issue#284LouisLeNezet2026-04-13 08:03Remove saveAs versions.yml check from config
- Pull request#282atrigila2026-04-03 17:24
- Issue#113LouisLeNezet2026-03-31 09:19Use meta maps for adding external arguments in modules
- Issue#138LouisLeNezet2026-03-31 09:16Get rid of empty processes
- Pull request#275LouisLeNezet2026-03-23 15:04
- Pull request#271atrigila2026-03-15 21:20
- Pull request#267atrigila2026-03-15 21:07
- Issue comment#246atrigila2026-03-15 17:46Update modules
- Issue comment#269atrigila2026-03-15 01:21improve genotype usage error
- Pull request#269atrigila2026-03-15 01:18
- Pull request#266atrigila2026-03-15 00:00
- Pull request#259LouisLeNezet2026-03-09 11:19
- Issue comment#259nf-core-bot2026-03-05 22:12Switch to nf-core variant calling subworkflow
- Issue comment#223LouisLeNezet2026-02-20 13:48Add genetic map support for `SHAPEIT5` sbwf
- Pull request#257LouisLeNezet2026-02-20 11:11
- Pull request#257LouisLeNezet2026-02-20 11:11
- Pull request#255LouisLeNezet2026-02-12 16:08
- Issue comment#246nf-core-bot2026-02-11 23:57Update modules
- Issue comment#253nf-core-bot2026-02-11 16:34Switch to nf-core concatenation subworkflow
- Pull request#252LouisLeNezet2026-02-11 14:47
- Issue comment#252nf-core-bot2026-02-11 09:30Use nf-core sbwf for downsampling
- Pull request#252LouisLeNezet2026-02-11 09:29
- Issue comment#248LouisLeNezet2026-02-07 19:48Move to nf-core sbwf `GLIMPSE1`
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 27 stars here means stars gained during the window, not the repo's star count.