nf-core/references is a bioinformatics pipeline that build references, for multiple use cases
active 2024-01-12 → 2026-08-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 946 days from 2024-01-12 to 2026-08-14. Pushes: 170 total, peak 23 in a day. Pull requests: 147 total, peak 7 in a day. Issues: 47 total, peak 8 in a day. Comments: 208 total, peak 48 in a day. Stars: 14 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| maxulysse | 523 | 127 | 134 | 126 |
| edmundmiller | 91 | 39 | 6 | 11 |
| LouisLeNezet | 27 | 0 | 0 | 15 |
| adamrtalbot | 25 | 0 | 0 | 10 |
| nf-core-bot | 16 | 2 | 2 | 12 |
| jfy133 | 15 | 1 | 0 | 8 |
| sateeshperi | 14 | 1 | 1 | 2 |
| FriederikeHanssen | 13 | 0 | 0 | 6 |
| pinin4fjords | 12 | 0 | 0 | 7 |
| mashehu | 9 | 0 | 0 | 4 |
| heuermh | 8 | 0 | 0 | 4 |
| matthdsm | 4 | 0 | 0 | 0 |
| mribeirodantas | 3 | 0 | 0 | 1 |
| nvnieuwk | 3 | 0 | 1 | 1 |
| bentsherman | 2 | 0 | 0 | 1 |
| itrujnara | 2 | 0 | 0 | 0 |
| dependabot[bot] | 2 | 0 | 2 | 0 |
| allthingsgenome | 1 | 0 | 0 | 0 |
| ewels | 1 | 0 | 1 | 0 |
| anilthanki | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#135dependabot[bot]2026-04-30 09:19
- Pull request#135dependabot[bot]2026-04-30 09:19
- Pull request#132maxulysse2026-01-15 13:17
- Pull request#131nf-core-bot2025-11-20 09:32
- Issue#130anilthanki2025-10-31 14:42Creates and uses `HISAT2_EXTRACTSPLICESITES` when hisat2_extractsplicesites not specified
- Pull request#122maxulysse2025-10-23 07:27
- Pull request#128nf-core-bot2025-10-16 13:40
- Issue comment#122mashehu2025-10-02 14:11Fake release to fix sync and all nf-core goodness
- Pull request#127maxulysse2025-10-02 14:09
- Pull request#124maxulysse2025-08-28 16:41
- Pull request#124maxulysse2025-08-27 17:30
- Pull request#122maxulysse2025-07-14 17:13
- Pull request#121maxulysse2025-07-14 17:10
- Pull request#117maxulysse2025-07-14 16:14
- Pull request#108maxulysse2025-07-14 10:07
- Issue comment#114maxulysse2025-07-10 10:15multiQC in its own subworkflow
- Pull request#114maxulysse2025-07-10 10:15
- Pull request#119maxulysse2025-06-04 17:36
- Pull request#119maxulysse2025-05-23 14:38
- Pull request#118maxulysse2025-05-22 13:49
- Pull request#118maxulysse2025-05-22 12:50
- Issue comment#117nvnieuwk2025-05-20 13:54Update workflow output defs to 25.04.0
- Pull request#117nvnieuwk2025-05-20 13:38
- Issue#116matthdsm2025-05-06 07:44Add support for `snap-aligner` index generation
- Pull request#115maxulysse2025-04-30 16:15
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 14 stars here means stars gained during the window, not the repo's star count.