nf-core pipeline for data submission to ENA
active 2025-10-24 → 2026-07-30 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 280 days from 2025-10-24 to 2026-07-30. Pushes: 129 total, peak 14 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 13 total, peak 6 in a day. Comments: 20 total, peak 7 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| KateSakharova | 67 | 53 | 1 | 6 |
| ochkalova | 50 | 38 | 0 | 3 |
| timrozday-mgnify | 19 | 18 | 0 | 0 |
| fxquah | 18 | 11 | 0 | 3 |
| mberacochea | 6 | 3 | 0 | 1 |
| nf-core-bot | 5 | 3 | 1 | 1 |
| vagkaratzas | 4 | 0 | 0 | 3 |
| Y-Pei | 3 | 3 | 0 | 0 |
| github-actions[bot] | 2 | 0 | 0 | 2 |
| matthdsm | 1 | 0 | 0 | 1 |
| vcepeda | 1 | 0 | 1 | 0 |
| FernandoDuarteF | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#28ochkalova2026-05-11 21:23Add a subworkflow to upload raw reads to ENA
- Issue#28ochkalova2026-05-10 23:54Add a subworkflow to upload raw reads to ENA
- Issue#41ochkalova2026-04-24 09:13Track versions in all workflows of the pipeline
- Issue comment#39vagkaratzas2026-03-27 11:26Add tests, use ena-webin-cli handler, refactor modules.conf and update docs
- Pull request#35KateSakharova2026-03-12 13:34
- Pull request#27nf-core-bot2026-03-06 11:02
- Issue comment#27nf-core-bot2026-03-05 17:41Important! Template update for nf-core/tools v3.5.1
- Issue#24mberacochea2025-11-05 16:17[ENA] For metagenomic assemblies we should keep track of the run-ref
- Issue#10KateSakharova2025-10-29 17:16Add optional steps to genome_submit subworkflow to handle metadata (RNA)
- Issue#8KateSakharova2025-10-29 17:16Create an nf-core module for study creation using assembly_uploader
- Issue#8KateSakharova2025-10-29 17:15Create an nf-core module for study creation using assembly_uploader
- Issue comment#8KateSakharova2025-10-29 17:15Create an nf-core module for study creation using assembly_uploader
- Issue comment#19github-actions[bot]2025-10-29 11:467 add optional steps to genome submit subworkflow to handle metadata checkm2
- Issue comment#3fxquah2025-10-29 11:05Create nf-core module for assembly_uploader
- Issue#3fxquah2025-10-29 11:04Create nf-core module for assembly_uploader
- Pull request#16vcepeda2025-10-29 09:45
- Issue comment#15github-actions[bot]2025-10-28 15:19Feature/kate fix
- Issue#11KateSakharova2025-10-28 11:35Add optional steps to genome_submit subworkflow to handle metadata (Taxonomy)
- Issue#10KateSakharova2025-10-28 10:59Add optional steps to genome_submit subworkflow to handle metadata (RNA)
- Issue#9KateSakharova2025-10-28 10:29Add optional steps to genome_submit subworkflow to handle metadata (coverm)
- Issue#8ochkalova2025-10-28 10:10Create an nf-core module for study creation using assembly_uploader
- Issue#3fxquah2025-10-28 09:59Create nf-core module for assembly_uploader
- Issue#3fxquah2025-10-28 09:59Create nf-core module for assembly_uploader
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.