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nf-core/spatialtranscriptomics

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Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell RNA-seq data, designed for 10x genomics visium and single cell transcriptomics.

active 2023-12-12 → 2024-04-12 (UTC)

Partial coverage18,269 / 23,415 hourly files (78%) · 2 absent upstream · 5,144 failed, retryable2023-12-10 → 2026-08-12 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
65
Pushes
23
Pull requests
10
Issues
2
Stars
2
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 123 days from 2023-12-12 to 2024-04-12. Pushes: 23 total, peak 10 in a day. Pull requests: 10 total, peak 5 in a day. Issues: 2 total, peak 1 in a day. Comments: 15 total, peak 3 in a day. Stars: 2 total, peak 1 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
fasterius361985
cavenel7312
github-actions[bot]6006
giovp2002
nf-core-bot2110

Recent activity

Latest issues, pull requests and releases

  • Issue comment#74fasterius2024-04-04 06:01
    Missing SpatialDE package in Docker container for ST_SPATIAL_DE process
  • Issue comment#67fasterius2024-03-08 12:40
    Use spatialdata
  • Issue comment#67github-actions[bot]2024-01-31 08:56
    Use spatialdata
  • Issue comment#67github-actions[bot]2024-01-31 08:55
    Use spatialdata
  • Pull request#67cavenel2024-01-31 08:55
  • Pull request#64fasterius2024-01-26 08:36
  • Issue comment#39giovp2024-01-24 08:58
    Add SpatialData as output
  • Issue comment#39cavenel2024-01-24 08:52
    Add SpatialData as output
  • Issue comment#39giovp2024-01-24 08:32
    Add SpatialData as output
  • Issue#65fasterius2024-01-24 06:32
    Rename the pipeline
  • Issue comment#64github-actions[bot]2024-01-23 08:28
    Report updates
  • Pull request#64fasterius2024-01-23 08:27
  • Pull request#63fasterius2024-01-04 17:23
  • Issue comment#63github-actions[bot]2024-01-04 17:15
    Documentation
  • Pull request#63fasterius2024-01-04 17:14
  • Pull request#62fasterius2023-12-20 17:11
  • Issue comment#62github-actions[bot]2023-12-20 17:06
    Important! Template update for nf-core/tools v2.11.1
  • Pull request#62nf-core-bot2023-12-20 17:05
  • Pull request#60fasterius2023-12-20 12:46
  • Pull request#61fasterius2023-12-20 12:46
  • Issue comment#46fasterius2023-12-20 12:18
    Add checks for QC filtering
  • Issue#46fasterius2023-12-20 12:18
    Add checks for QC filtering
  • Issue comment#61github-actions[bot]2023-12-20 08:53
    Allow tarballed inputs instead of only directories
  • Pull request#61fasterius2023-12-20 08:51

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.