Making whole bacterial genome sequencing data analysis easy
active 2023-08-27 → 2026-02-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 899 days from 2023-08-27 to 2026-02-10. Pushes: 2 total, peak 1 in a day. Pull requests: 2 total, peak 2 in a day. Issues: 7 total, peak 1 in a day. Comments: 4 total, peak 2 in a day. Stars: 24 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| nmquijada | 4 | 2 | 2 | 0 |
| biobrad | 2 | 0 | 0 | 2 |
| claramicro | 2 | 0 | 0 | 1 |
| matiajan | 1 | 0 | 0 | 0 |
| d-kk | 1 | 0 | 0 | 1 |
| Vikash84 | 1 | 0 | 0 | 0 |
| carmennns2 | 1 | 0 | 0 | 0 |
| achald7867 | 1 | 0 | 0 | 0 |
| Khabibullin543 | 1 | 0 | 0 | 0 |
| Rubenjues | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#77matiajan2025-11-19 16:35ANI
- Issue#76Vikash842025-03-06 06:26nonopore reads input in analysis pipeline
- Issue#75achald78672025-02-26 16:09Sample did not generate an assembly file and will be excluded for further analysis
- Pull request#74nmquijada2024-11-08 10:52
- Pull request#74nmquijada2024-11-08 10:52
- Issue#73carmennns22024-04-11 23:29Bootstrap value?
- Issue comment#49d-kk2024-03-26 23:21Suggestion - Incorporate checkpointing
- Issue comment#72biobrad2024-01-20 22:05installing kraken2 database
- Issue comment#72biobrad2024-01-20 20:17installing kraken2 database
- Issue#72claramicro2024-01-11 11:58installing kraken2 database
- Issue comment#70claramicro2024-01-11 11:11tormes-setup ERROR minikraken2
- Issue#71Khabibullin5432023-12-12 10:39Pipeline usage with scaffolds.fasta as input file
- Issue#70Rubenjues2023-08-27 17:04tormes-setup ERROR minikraken2
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 24 stars here means stars gained during the window, not the repo's star count.