Framework for the automated construction of uPheno 2.0
active 2023-08-17 → 2025-07-31 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 715 days from 2023-08-17 to 2025-07-31. Pushes: 73 total, peak 8 in a day. Pull requests: 13 total, peak 3 in a day. Issues: 29 total, peak 17 in a day. Comments: 16 total, peak 3 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue comment#64matentzn2025-07-31 23:17Adding mappings into main upheno release
- Issue#64matentzn2025-07-31 23:17Adding mappings into main upheno release
- Issue#47matentzn2025-07-31 23:16Add a pipeline for matching DOSDP pattern files
- Issue comment#42matentzn2025-07-31 23:16HP vs MP special cases
- Issue#42matentzn2025-07-31 23:16HP vs MP special cases
- Issue#51matentzn2025-07-31 23:13Phenio toolkit
- Issue#53matentzn2025-07-31 23:13Add custom upheno lexical pipeline to phenio-utils
- Issue#39matentzn2025-07-31 23:13Create a Monarch Data Science library
- Issue#41matentzn2025-07-31 23:13Add some kind of anti slim approach for upheno classes that should be skipped by semantic similarity
- Issue#49matentzn2025-07-31 23:13Create generic patterns on all remaining object properties
- Issue#17matentzn2025-07-31 23:13Maintain the cross-species mappings TSVs as part of release (alpha)
- Issue#18matentzn2025-07-31 23:13uPheno 2: Alpha review
- Issue#38matentzn2025-07-31 23:13Provide instructions to create equivalence model of uPheno after the fact
- Issue#14matentzn2025-07-31 23:13Ensure basic phenotype classification
- Issue#15matentzn2025-07-31 23:13Handle the mapping of the old ID*PHENOTYPE terms to new system
- Issue#16matentzn2025-07-31 23:13Ensure that there is no "rogue" terms on the top level of the class hierarchy (under thing)
- Issue#33matentzn2025-07-31 23:11PLANA_0007536 is both a property and a class/individual
- Issue#34matentzn2025-07-31 23:11uPheno 2 should mirror _all_ phenotypes
- Issue#21matentzn2025-07-31 23:11Ensure appropriate Metadata on final ontology artefacts
- Pull request#71matentzn2025-07-31 21:53
- Issue comment#71matentzn2025-07-31 21:53Fix templates that generate incorrect labels
- Pull request#71rays222025-07-23 16:10
- Releasematentzn2025-07-21 12:142025-07-21 release
- Issue#70matentzn2025-07-21 12:12UPHENO_0056750 and UPHENO_0016048 are dangling
- Pull request#69matentzn2025-07-18 20:20
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.