Extract 3D contacts (.pairs) from sequencing alignments
active 2024-04-27 → 2026-03-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 693 days from 2024-04-27 to 2026-03-20. Pushes: 15 total, peak 4 in a day. Pull requests: 15 total, peak 6 in a day. Issues: 18 total, peak 2 in a day. Comments: 38 total, peak 5 in a day. Stars: 18 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| agalitsyna | 35 | 6 | 1 | 16 |
| Phlya | 17 | 5 | 2 | 7 |
| golobor | 13 | 4 | 8 | 1 |
| ShigrafS | 4 | 0 | 2 | 1 |
| YingChen94 | 3 | 0 | 0 | 1 |
| Salvacasani | 3 | 0 | 0 | 3 |
| Wong718 | 2 | 0 | 0 | 2 |
| nvictus | 2 | 0 | 0 | 2 |
| SaimMomin12 | 2 | 0 | 0 | 1 |
| review-notebook-app[bot] | 1 | 0 | 0 | 1 |
| gbdnorden | 1 | 0 | 0 | 0 |
| sergpolly | 1 | 0 | 0 | 0 |
| prototaxites | 1 | 0 | 0 | 0 |
| xscapintime | 1 | 0 | 0 | 1 |
| niederhuth | 1 | 0 | 0 | 0 |
| jmarshall | 1 | 0 | 0 | 1 |
| jiehua1995 | 1 | 0 | 0 | 0 |
| muffato | 1 | 0 | 1 | 0 |
| WengangXbio | 1 | 0 | 0 | 0 |
| arodel21 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#285jyw-atgithub2026-03-20 03:06No Version 1.1.3 on Pypl
- Issue#284Jwindler2026-03-12 09:14pairtools split error
- Issue#279sergpolly2025-10-28 21:43bug in "select" when filtering and --remove-columns at the same time
- Pull request#278Phlya2025-10-23 15:25
- Issue comment#272Phlya2025-10-03 14:41Fix --extra-col-pair example in the docs
- Issue#277Phlya2025-09-25 09:43Simplify select expression for excluding / including specific regions
- Issue#276WengangXbio2025-09-18 08:38Install Error
- Issue comment#272review-notebook-app[bot]2025-08-20 12:28Fix --extra-col-pair example in the docs
- Issue comment#106Phlya2025-07-30 15:52detecting optical duplicates
- Issue comment#106YingChen942025-07-29 18:01detecting optical duplicates
- Pull request#273Phlya2025-07-15 15:28
- Issue#250agalitsyna2025-07-14 18:58Python 3.13 removes pipes
- Issue comment#255agalitsyna2025-07-14 18:56Could support single cell Hi-C ?
- Issue#255agalitsyna2025-07-14 18:56Could support single cell Hi-C ?
- Issue comment#268ShigrafS2025-06-29 11:51Fixed CLI errors.
- Issue comment#266agalitsyna2025-06-19 17:58Deprecation of `pipes` Module in Python 3.13 in `pairtools/lib/fileio.py`
- Issue#266agalitsyna2025-06-19 17:58Deprecation of `pipes` Module in Python 3.13 in `pairtools/lib/fileio.py`
- Issue#271YingChen942025-06-17 19:40Understanding --max-mismatch default 3bp for dedup
- Issue comment#271Phlya2025-06-17 15:06Understanding --max-mismatch default 3bp for dedup
- Issue#271YingChen942025-06-17 15:02Understanding --max-mismatch default 3bp for dedup
- Issue comment#270jmarshall2025-06-06 10:39Warning when running with pysam 0.23.1 leading to non-zero exit code
- Issue comment#270nvictus2025-06-05 13:46Warning when running with pysam 0.23.1 leading to non-zero exit code
- Issue#270prototaxites2025-05-30 12:35Warning when running with pysam 0.23.1 leading to non-zero exit code
- Pull request#265ShigrafS2025-05-17 06:07
- Pull request#268ShigrafS2025-04-20 09:50
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 18 stars here means stars gained during the window, not the repo's star count.