Flexible and efficient parsing, interpreting and editing of sequencing reads
active 2025-02-18 → 2026-02-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 359 days from 2025-02-18 to 2026-02-11. Pushes: 11 total, peak 4 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 14 total, peak 3 in a day. Comments: 20 total, peak 3 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue comment#53Yenaled2026-01-10 13:36Global Buffer Overflow in writeBam
- Issue comment#53sqdshguy2026-01-10 13:04Global Buffer Overflow in writeBam
- Issue comment#53Yenaled2026-01-10 12:58Global Buffer Overflow in writeBam
- Pull request#55Yenaled2025-12-08 10:13
- Issue comment#45bentyeh2025-12-07 21:29bug: multi-thread race condition
- Pull request#54sqdshguy2025-12-07 16:24
- Issue comment#50bentyeh2025-12-03 20:52minFinds/minFindsG without --assign
- Issue comment#47Yenaled2025-12-03 14:47specifying substitution rate in partial5 can prevent identifying longest match
- Issue comment#49Yenaled2025-12-03 14:47Undesired/undocumented behavior: a shorter match without errors is prioritized over a longer match within the error tolerance
- Issue#50bentyeh2025-12-02 00:02minFinds/minFindsG without --assign
- Issue comment#47bentyeh2025-11-05 19:42specifying substitution rate in partial5 can prevent identifying longest match
- Issue#49bentyeh2025-11-05 19:05Undesired/undocumented behavior: a shorter match without errors is prioritized over a longer match within the error tolerance
- Issue#45Yenaled2025-10-20 03:55bug: multi-thread race condition
- Issue#43clintval2025-09-21 22:16Reverse complement config option seems incompatible with tags from files
- Issue#42clintval2025-09-21 21:52Specifying duplicate options on the CLI overrides previous options silently
- Issue#41clintval2025-09-21 20:55If directories for output are not created, output is absent silently
- Issue#40clintval2025-09-14 01:57How to trim after, instead of before, extraction
- Issue comment#39Yenaled2025-09-14 01:20How to keep pairing status in BAM output when also providing index FASTQs
- Issue#39clintval2025-09-14 01:16How to keep pairing status in BAM output when also providing index FASTQs
- Issue#38mgy5202025-08-08 03:34Can files generated by demultiplexing be output to named pipes?
- Issue comment#38mgy5202025-08-04 10:57Can files generated by demultiplexing be output to named pipes?
- Issue comment#37BiotechPedro2025-07-24 17:01instance of 'std::overflow_error' - robin_hood::map overflow
- Issue comment#37Yenaled2025-07-23 10:11instance of 'std::overflow_error' - robin_hood::map overflow
- Issue comment#37BiotechPedro2025-07-22 09:18instance of 'std::overflow_error' - robin_hood::map overflow
- Issue comment#37Yenaled2025-07-21 22:27instance of 'std::overflow_error' - robin_hood::map overflow
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.