A comprehensive toolkit for mutational signature analysis
active 2023-12-04 → 2025-12-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 754 days from 2023-12-04 to 2025-12-26. Pushes: 13 total, peak 3 in a day. Pull requests: 11 total, peak 2 in a day. Issues: 22 total, peak 2 in a day. Comments: 29 total, peak 8 in a day. Stars: 32 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Hu-JIN | 48 | 9 | 10 | 21 |
| BeGeiger | 4 | 4 | 0 | 0 |
| mandronescu | 4 | 0 | 0 | 3 |
| timchu90 | 2 | 0 | 0 | 1 |
| gretherv | 2 | 0 | 0 | 1 |
| jfajn | 2 | 0 | 0 | 1 |
| jinhys | 2 | 0 | 0 | 1 |
| dspagnolo09 | 2 | 0 | 0 | 1 |
| liumoLM | 1 | 0 | 0 | 0 |
| JuseTiZ | 1 | 0 | 1 | 0 |
| quail768 | 1 | 0 | 0 | 0 |
| shengxindaniu | 1 | 0 | 0 | 0 |
| itigupta2429 | 1 | 0 | 0 | 0 |
| maia-munteanu | 1 | 0 | 0 | 0 |
| Spirit-booze | 1 | 0 | 0 | 0 |
| andreyurch | 1 | 0 | 0 | 0 |
| vanshikabidhan | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#90Hu-JIN2025-12-26 23:29Best practice for WES signature assignment catalog selection in MuSiCal
- Issue comment#83Hu-JIN2025-04-15 19:46"maximum number of iterations reached" in de novo signatures extraction
- Issue comment#88gretherv2025-04-02 17:41Identifying New Signatures Present in my Cohort
- Issue comment#87Hu-JIN2025-03-31 21:28how to generate TriNucFreq_Weights.csv
- Issue comment#80Hu-JIN2025-03-31 21:16TypeError: _nnls.nnls() missing required argument 'n' (pos 3)
- Issue comment#81Hu-JIN2025-03-31 21:13MuSiCal looses signatures when refitting against reduced set of signatures
- Issue comment#87timchu902025-03-31 21:12how to generate TriNucFreq_Weights.csv
- Issue comment#84Hu-JIN2025-03-31 21:08How to account for cohort stratification?
- Issue comment#87Hu-JIN2025-03-31 20:56how to generate TriNucFreq_Weights.csv
- Issue comment#88Hu-JIN2025-03-31 20:53Identifying New Signatures Present in my Cohort
- Issue comment#89Hu-JIN2025-03-31 20:35The job stops after finding lambda_tilde
- Issue#89liumoLM2025-03-09 03:11The job stops after finding lambda_tilde
- Issue#88gretherv2025-02-18 21:44Identifying New Signatures Present in my Cohort
- Issue#87timchu902025-02-18 20:54how to generate TriNucFreq_Weights.csv
- Issue#86Hu-JIN2025-02-14 21:56Gini coefficient calculation does not deal with all-zero inputs
- Issue#85Hu-JIN2025-02-10 23:24Inconsistency in the example script on restricting to tumor type-specific signatures during refitting
- Issue#84vanshikabidhan2025-01-09 14:47How to account for cohort stratification?
- Issue comment#83Hu-JIN2024-11-01 14:24"maximum number of iterations reached" in de novo signatures extraction
- Issue#83Spirit-booze2024-10-31 21:45"maximum number of iterations reached" in de novo signatures extraction
- Issue#82shengxindaniu2024-10-17 05:13Matching and Referring - Signature Assignment
- Issue#81quail7682024-10-11 08:11MuSiCal looses signatures when refitting against reduced set of signatures
- Issue#80andreyurch2024-09-19 13:17TypeError: _nnls.nnls() missing required argument 'n' (pos 3)
- Issue#79Hu-JIN2024-09-07 17:56Run MuSical refitting step sing customized set of signatures
- Issue comment#79Hu-JIN2024-09-07 17:56Run MuSical refitting step sing customized set of signatures
- Issue#79itigupta24292024-08-13 19:46Run MuSical refitting step sing customized set of signatures
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 32 stars here means stars gained during the window, not the repo's star count.