Sampling and inference of genealogies with recombination
active 2024-03-04 → 2026-05-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 813 days from 2024-03-04 to 2026-05-25. Pushes: 39 total, peak 16 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 45 total, peak 5 in a day. Comments: 117 total, peak 13 in a day. Stars: 43 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| YunDeng98 | 100 | 39 | 0 | 55 |
| nspope | 16 | 0 | 0 | 12 |
| zhangming-m | 12 | 0 | 0 | 8 |
| dandanpeng | 9 | 0 | 0 | 6 |
| santiago1234 | 8 | 0 | 0 | 5 |
| mehakmadhura | 6 | 0 | 0 | 2 |
| moshejasper | 6 | 0 | 2 | 3 |
| baozg | 6 | 0 | 0 | 5 |
| dcdehaas | 5 | 0 | 1 | 2 |
| kitchensjn | 5 | 0 | 0 | 4 |
| AprilWei001 | 4 | 0 | 0 | 1 |
| jitang-github | 4 | 0 | 0 | 3 |
| pmckenz1 | 3 | 0 | 0 | 1 |
| skhalid7 | 3 | 0 | 0 | 1 |
| sylviah23 | 2 | 0 | 0 | 1 |
| currocam | 2 | 0 | 0 | 2 |
| TymekPieszko | 2 | 0 | 0 | 1 |
| rosiezhong | 2 | 0 | 0 | 2 |
| ManonLeGoff | 2 | 0 | 0 | 0 |
| hanyoupan | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#46nspope2026-05-25 03:52VCF parser treats non-"1" coding as "0"
- Issue comment#40YunDeng982026-02-11 00:22Incomplete parallel run due to "auto-debug" failed
- Issue#40rpianezza2026-02-03 09:09Incomplete parallel run due to "auto-debug" failed
- Issue comment#38zhangming-m2026-01-05 17:36Unexpected trend in diversity_fit_mse convergence plot
- Issue comment#38YunDeng982026-01-05 17:36Unexpected trend in diversity_fit_mse convergence plot
- Issue#30zhangming-m2026-01-05 04:37-n Value How big should I set it？
- Issue#37zhangming-m2026-01-04 08:14terminate called after throwing an instance of 'std::invalid_argument'
- Issue comment#10currocam2025-09-05 10:01Returning a "full ARG"
- Issue comment#10currocam2025-09-03 10:14Returning a "full ARG"
- ReleaseYunDeng982025-06-20 18:16SINGER beta version v0.1.8
- ReleaseYunDeng982025-06-20 17:24SINGER beta v0.1.8
- Issue#36ManonLeGoff2025-05-28 11:37Assertion `k1 < 1e5 and k2 < 1e5' failed
- Issue#36ManonLeGoff2025-05-28 08:30Assertion `k1 < 1e5 and k2 < 1e5' failed
- Pull request#35moshejasper2025-05-16 12:15
- Pull request#35moshejasper2025-05-16 12:14
- Issue comment#31moshejasper2025-05-16 04:11No output from compute_trace.py
- Issue comment#32zhangming-m2025-05-16 04:02Does the tree file generated by singer not contain population information？
- Issue comment#32moshejasper2025-05-16 04:01Does the tree file generated by singer not contain population information？
- Issue comment#33moshejasper2025-05-16 03:50What about the ancestral stat?
- Issue#34moshejasper2025-05-14 08:10SINGER isn't coping with .vcf.gz file
- Issue#33jiangzy262025-04-19 08:32What about the ancestral stat?
- Issue comment#21YunDeng982025-02-25 06:55Understanding parallel singer errror
- Issue#32zhangming-m2025-02-20 06:22Does the tree file generated by singer not contain population information？
- Issue comment#21zhangming-m2025-02-20 05:19Understanding parallel singer errror
- Issue comment#21zhangming-m2025-02-20 03:04Understanding parallel singer errror
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 43 stars here means stars gained during the window, not the repo's star count.