A collection of various utilities for GWAS summary statistics
active 2023-09-09 → 2025-08-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 712 days from 2023-09-09 to 2025-08-20. Pushes: 2 total, peak 1 in a day. Pull requests: 2 total, peak 2 in a day. Issues: 2 total, peak 1 in a day. Comments: 5 total, peak 3 in a day. Stars: 15 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue#57YaxinL2025-06-09 17:13sumstats.py mat output .mat files show zero overlapping SNPs in downstream analysis, fixed by reformatting CSV with write.table
- Issue comment#56ofrei2024-03-15 20:54Update sumstats.py zscore (deprecated 'float' alias)
- Pull request#56ofrei2024-03-15 20:53
- Pull request#56EPTissink2024-03-15 13:08
- Releaseofrei2024-02-03 13:01v0.9.3
- Issue#55showers142023-11-02 08:01Seeking Guidance on Calculating Effective Sample Size for Continuous Traits in GWAS
- Issue comment#53zainab-cpu2023-10-30 14:23sumstats.py clump ##Error
- Issue comment#54zainab-cpu2023-10-30 14:17clumping problem´s
- Issue comment#54zainab-cpu2023-10-30 14:07clumping problem´s
- Issue comment#44denvdm2023-09-18 12:38Handle A1/REF/ALT from plink2 glm
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 15 stars here means stars gained during the window, not the repo's star count.