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3D segmentation for cells and organoids of 3D multichannel images

active 2025-03-242026-02-09 (UTC)

Partial coverage24,657 / 26,317 hourly files (94%) · 2 absent upstream · 1,660 failed, retryable2023-08-152026-08-15 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
41
Pushes
9
Pull requests
1
Issues
6
Stars
18
Forks
1

Activity over time

Daily event counts in the loaded window

Line chart, 323 days from 2025-03-24 to 2026-02-09. Pushes: 9 total, peak 7 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 6 total, peak 1 in a day. Comments: 4 total, peak 2 in a day. Stars: 18 total, peak 4 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
quantacell11902
Ding-spec3000
cuenca-mb2001
leoguignard2001
kmin9401000
mario-koddenbrock1010

Recent activity

Latest issues, pull requests and releases

  • Issue#6Ding-spec2026-02-09 03:00
    [New] ValueError: attempt to get argmax of an empty sequence in DetectMainOrganoidI_CLAHE with Specific Data
  • Issue#6Ding-spec2026-02-08 05:35
    [Bug] Image dimensions (Z, Y, X) exceed maximum allowed limits, tiling required
  • Issue#6Ding-spec2026-02-06 16:38
    [Bug] Image dimensions (Z, Y, X) exceed maximum allowed limits, tiling required
  • Pull request#5mario-koddenbrock2025-08-03 21:26
  • Issue comment#2quantacell2025-06-24 13:28
    Models' path missing
  • Issue comment#3quantacell2025-06-24 13:13
    Synthetic data generation code
  • Issue#3kmin9402025-06-24 00:42
    Synthetic data generation code
  • Issue#2cuenca-mb2025-05-19 13:14
    Models' path missing
  • Issue comment#1leoguignard2025-05-16 09:09
    Installation issues
  • Issue comment#1cuenca-mb2025-05-16 08:59
    Installation issues
  • Issue#1leoguignard2025-05-15 14:43
    Installation issues

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 18 stars here means stars gained during the window, not the repo's star count.