Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
active 2023-11-01 → 2025-10-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 725 days from 2023-11-01 to 2025-10-25. Pushes: 91 total, peak 7 in a day. Pull requests: 19 total, peak 4 in a day. Issues: 15 total, peak 2 in a day. Comments: 31 total, peak 7 in a day. Stars: 38 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Congm12 | 127 | 90 | 11 | 18 |
| michaelJwilson | 8 | 0 | 8 | 0 |
| kzb193 | 3 | 0 | 0 | 2 |
| al3xmlt030 | 3 | 0 | 0 | 3 |
| onmyojiyys | 3 | 0 | 0 | 2 |
| parth2608 | 2 | 0 | 0 | 0 |
| lanting52119 | 2 | 0 | 0 | 2 |
| Danne1210 | 2 | 0 | 0 | 1 |
| wangmengbo | 2 | 0 | 0 | 1 |
| Nina-SingleCell | 2 | 0 | 0 | 1 |
| vravik | 1 | 0 | 0 | 0 |
| ShumingZhang1997 | 1 | 0 | 0 | 0 |
| yanglq-bioinfo | 1 | 0 | 0 | 0 |
| vincentguo0418 | 1 | 0 | 0 | 0 |
| balabanmetin | 1 | 1 | 0 | 0 |
| MiaoGaoUK | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#26Congm122025-10-25 01:07Estimate of tumor proportion returns NA for most of the spots
- Issue comment#24Congm122025-09-29 15:51Error in parse_final_snp
- Issue comment#23Congm122025-06-25 20:05Missing values and only zeros in tumor proportion
- Issue#23ShumingZhang19972025-05-13 20:51Missing values and only zeros in tumor proportion
- Issue#22vincentguo04182025-04-27 07:53Qustions about step run CalicoST
- Issue#21yanglq-bioinfo2025-04-16 03:08How to get the CN values matrix from results
- Issue comment#18Congm122025-03-15 14:23UnboundLocalError
- Issue comment#18al3xmlt0302025-03-12 11:57UnboundLocalError
- Issue comment#20Nina-SingleCell2025-03-10 13:25Data in the Phasing panel cannot be downloaded
- Issue comment#20Congm122025-03-07 23:41Data in the Phasing panel cannot be downloaded
- Issue#20Congm122025-03-07 23:41Data in the Phasing panel cannot be downloaded
- Issue#20Nina-SingleCell2025-03-07 02:55Data in the Phasing panel cannot be downloaded
- Issue comment#12MiaoGaoUK2025-01-26 20:10empty result when using cellsnp-lite
- Issue comment#18kzb1932025-01-03 17:56UnboundLocalError
- Issue comment#18Congm122025-01-02 16:16UnboundLocalError
- Issue comment#19Danne12102024-12-31 05:46whether this tool could be applied on the dataset that missing the bam file
- Issue comment#18kzb1932024-12-30 21:24UnboundLocalError
- Issue comment#18Congm122024-12-30 20:19UnboundLocalError
- Issue comment#19Congm122024-12-30 19:41whether this tool could be applied on the dataset that missing the bam file
- Issue#19Congm122024-12-30 19:41whether this tool could be applied on the dataset that missing the bam file
- Issue#19Danne12102024-12-30 13:53whether this tool could be applied on the dataset that missing the bam file
- Issue#18kzb1932024-12-29 22:54UnboundLocalError
- Pull request#17Congm122024-12-10 14:59
- Issue comment#13Congm122024-11-28 04:20parse_final_snp error
- Pull request#16Congm122024-11-28 04:18
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 38 stars here means stars gained during the window, not the repo's star count.