DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
active 2025-02-12 → 2026-05-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 472 days from 2025-02-12 to 2026-05-29. Pushes: 37 total, peak 7 in a day. Pull requests: 4 total, peak 1 in a day. Issues: 18 total, peak 2 in a day. Comments: 29 total, peak 4 in a day. Stars: 45 total, peak 7 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| KalinNonchev | 52 | 33 | 2 | 13 |
| MaVitt01 | 3 | 0 | 0 | 2 |
| kristaxying | 3 | 0 | 0 | 1 |
| duypham2108 | 3 | 0 | 0 | 2 |
| github-actions[bot] | 3 | 3 | 0 | 0 |
| asharmafr | 2 | 0 | 0 | 0 |
| Hanminghao | 2 | 0 | 0 | 1 |
| Himanshunitrr | 2 | 0 | 1 | 0 |
| bach-zouk | 2 | 0 | 0 | 2 |
| xufangfang408 | 1 | 0 | 0 | 0 |
| qinghezeng | 1 | 0 | 0 | 0 |
| glebmanaev | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#17KalinNonchev2026-02-18 18:47Employing DeepCell in COSMX data
- Issue#16KalinNonchev2025-10-02 11:45The spatial coordinates do not properly align with the H&E image in sample ZEN38
- Issue comment#16KalinNonchev2025-10-02 11:45The spatial coordinates do not properly align with the H&E image in sample ZEN38
- Pull request#15glebmanaev2025-09-29 10:24
- Issue#14Himanshunitrr2025-09-10 02:50slightly confused wrt the magnification of H&E tiles
- Pull request#13Himanshunitrr2025-09-09 01:30
- Issue comment#11kristaxying2025-08-11 02:53The other model of benchmark evaluation
- Issue comment#11KalinNonchev2025-08-08 09:34The other model of benchmark evaluation
- Issue#12kristaxying2025-08-05 10:49The prediction of ncbi867 data
- Issue#12kristaxying2025-08-05 10:21The prediction of ncbi867 data
- Issue#9KalinNonchev2025-07-30 14:47Train loss: nan
- Issue#11kristaxying2025-07-24 04:28The other model of benchmark evaluation
- Issue comment#10kristaxying2025-07-24 03:22The errors while running example Xenium data
- Issue comment#10KalinNonchev2025-07-24 02:57The errors while running example Xenium data
- Issue comment#10KalinNonchev2025-07-24 00:00The errors while running example Xenium data
- Issue comment#10kristaxying2025-07-23 13:04The errors while running example Xenium data
- Issue comment#10KalinNonchev2025-07-23 07:39The errors while running example Xenium data
- Issue comment#10KalinNonchev2025-07-22 11:55The errors while running example Xenium data
- Issue comment#10kristaxying2025-07-22 11:53The errors while running example Xenium data
- Issue comment#10KalinNonchev2025-07-22 11:48The errors while running example Xenium data
- Issue#10kristaxying2025-07-22 11:09The errors while running example Xenium data
- Issue#9mjgeor32025-07-21 18:13Train loss: nan
- Issue#8KalinNonchev2025-07-21 01:01How to use DeepSpot for gene expression super-resolution reconstruction？
- Issue#8xufangfang4082025-07-16 02:43How to use DeepSpot for gene expression super-resolution reconstruction？
- Issue#5KalinNonchev2025-07-08 11:09Issues with DeepCell Generalization to Hest-1k Xenium Dataset
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 45 stars here means stars gained during the window, not the repo's star count.