Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
active 2023-08-15 → 2026-01-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 896 days from 2023-08-15 to 2026-01-26. Pushes: 235 total, peak 25 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 73 total, peak 4 in a day. Comments: 193 total, peak 9 in a day. Stars: 56 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| raw-lab | 162 | 57 | 0 | 79 |
| decrevi | 143 | 99 | 1 | 35 |
| jhensl19 | 66 | 66 | 0 | 0 |
| raw937 | 20 | 8 | 0 | 11 |
| davidmadariaga | 8 | 0 | 0 | 7 |
| ebueren | 8 | 0 | 0 | 7 |
| pck00 | 7 | 0 | 0 | 5 |
| ereyred | 7 | 0 | 0 | 5 |
| mdhishamshaikh | 6 | 0 | 0 | 4 |
| kclambi1 | 6 | 0 | 0 | 3 |
| kayanac | 6 | 0 | 0 | 5 |
| madelinebellanger | 4 | 4 | 0 | 0 |
| mpdoane2 | 4 | 0 | 0 | 2 |
| XiaominWang12 | 4 | 0 | 0 | 2 |
| tranheim | 4 | 0 | 0 | 3 |
| alegarritano | 4 | 0 | 0 | 2 |
| ywangbioinfo | 3 | 0 | 0 | 2 |
| wittney-m | 3 | 0 | 0 | 2 |
| ACastellano-hub | 3 | 0 | 0 | 2 |
| chandnisidhu | 3 | 0 | 0 | 3 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#40raw-lab2025-12-10 19:40Use a custom HMM?
- Issue#40raw-lab2025-12-10 19:40Use a custom HMM?
- Issue#40Iamcluless2025-08-25 16:28Use a custom HMM?
- Issue#39danpal962025-07-21 16:53Model names filtered out by regex
- Issue comment#38danpal962025-07-09 16:54protein mode only accepts .faa
- Issue comment#38decrevi2025-07-09 15:58protein mode only accepts .faa
- Issue comment#36decrevi2025-07-08 22:44Change query_name to query.name to comply with pyhmmer >= 0.11.0
- Pull request#36decrevi2025-07-08 22:44
- Issue comment#37decrevi2025-07-08 22:17pyhmmer CPUs
- Issue#37decrevi2025-07-08 22:17pyhmmer CPUs
- Issue#38danpal962025-07-08 21:24protein mode only accepts .faa
- Issue#37danpal962025-07-08 19:39pyhmmer CPUs
- Issue comment#35decrevi2025-05-12 14:23Step 5b problems
- Issue#35decrevi2025-05-12 14:23Step 5b problems
- Issue comment#35decrevi2025-05-07 15:55Step 5b problems
- Issue#32decrevi2025-05-07 14:49No HMM DB Loaded
- Issue comment#35tranheim2025-05-01 16:42Step 5b problems
- Issue comment#35decrevi2025-04-30 19:35Step 5b problems
- Issue comment#35tranheim2025-04-30 14:47Step 5b problems
- Issue comment#34XiaominWang122025-04-23 03:23How use the NFIxDB in this tool MetaCerberus
- Issue#34XiaominWang122025-04-23 03:23How use the NFIxDB in this tool MetaCerberus
- Issue comment#34XiaominWang122025-04-17 01:16How use the NFIxDB in this tool MetaCerberus
- Issue comment#35decrevi2025-04-16 17:24Step 5b problems
- Issue comment#34decrevi2025-04-16 15:35How use the NFIxDB in this tool MetaCerberus
- Issue comment#35tranheim2025-04-16 14:35Step 5b problems
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 56 stars here means stars gained during the window, not the repo's star count.