Fast and frugal disk based k-mer counter
active 2023-08-18 → 2026-05-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1016 days from 2023-08-18 to 2026-05-29. Pushes: 45 total, peak 4 in a day. Pull requests: 6 total, peak 1 in a day. Issues: 39 total, peak 2 in a day. Comments: 76 total, peak 5 in a day. Stars: 91 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| marekkokot | 86 | 44 | 2 | 37 |
| GLking123 | 10 | 0 | 0 | 6 |
| jrostudent | 9 | 0 | 0 | 6 |
| JulianDicken | 5 | 0 | 0 | 3 |
| peter-kanvas | 4 | 0 | 0 | 2 |
| nikostr | 3 | 0 | 0 | 1 |
| GooLey1025 | 3 | 0 | 0 | 1 |
| JosephLalli | 3 | 0 | 0 | 1 |
| cmonat | 3 | 0 | 0 | 2 |
| shenwei356 | 3 | 0 | 0 | 1 |
| zhaotao1987 | 3 | 0 | 0 | 2 |
| MagpiePKU | 2 | 0 | 0 | 1 |
| tbenavi1 | 2 | 0 | 0 | 1 |
| liujilei156231 | 2 | 0 | 0 | 0 |
| maciejdlugosz | 2 | 1 | 1 | 0 |
| rhiannon-schembri | 2 | 0 | 0 | 1 |
| asl | 2 | 0 | 1 | 1 |
| julibeg | 2 | 0 | 0 | 0 |
| albanmathieu-pro | 2 | 0 | 0 | 2 |
| richardstoeckl | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#217marekkokot2026-05-29 09:32Small suggestion
- Issue comment#132marekkokot2026-01-13 06:22Protein sequence
- Issue comment#132tseemann2026-01-12 22:32Protein sequence
- Issue#249SunJJ2301202025-07-03 13:46KMC multi-samples kmer count
- Issue comment#248marekkokot2025-06-03 20:39KMC stay silent when output file is not created due to memory problem
- Issue comment#247marekkokot2025-06-03 20:34free(): invalid next size (fast) and Aborted (core dumped) with KMC 3.2.2 on SLURM cluster
- Issue comment#247cmonat2025-06-03 15:11free(): invalid next size (fast) and Aborted (core dumped) with KMC 3.2.2 on SLURM cluster
- Issue#247cmonat2025-06-03 15:11free(): invalid next size (fast) and Aborted (core dumped) with KMC 3.2.2 on SLURM cluster
- Issue comment#247cmonat2025-06-02 12:28free(): invalid next size (fast) and Aborted (core dumped) with KMC 3.2.2 on SLURM cluster
- Issue comment#246marekkokot2025-04-16 10:11kmc_tools transform histogram output issue - every second bin is empty
- Issue comment#246marekkokot2025-04-16 06:35kmc_tools transform histogram output issue - every second bin is empty
- Issue#246marekkokot2025-04-16 06:35kmc_tools transform histogram output issue - every second bin is empty
- Issue comment#246rhiannon-schembri2025-04-16 03:38kmc_tools transform histogram output issue - every second bin is empty
- Issue comment#246marekkokot2025-04-15 08:59kmc_tools transform histogram output issue - every second bin is empty
- Issue#246rhiannon-schembri2025-04-15 06:00kmc_tools transform histogram output issue - every second bin is empty
- Issue comment#207Xueliang242025-04-13 12:19kmc stuck at Stage 1: XX%(less than 100%)
- Issue#245julibeg2025-02-26 15:11`-t1` runs with ore than one thread
- Issue comment#245marekkokot2025-02-26 10:58`-t1` runs with ore than one thread
- Issue#245julibeg2025-02-26 07:46`-t1` runs with ore than one thread
- Issue comment#244GooLey10252025-02-03 14:45Error: some error while reading fastq file
- Issue#244GooLey10252025-02-03 14:45Error: some error while reading fastq file
- Issue#244GooLey10252025-01-26 04:27Error: some error while reading fastq file
- Issue#243JulianDicken2024-12-11 17:07Use an existing database for further counting
- Issue comment#243marekkokot2024-12-11 16:49Use an existing database for further counting
- Issue comment#243JulianDicken2024-12-11 14:27Use an existing database for further counting
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 91 stars here means stars gained during the window, not the repo's star count.