a long read simulator that can imitate many types of read problems
active 2023-09-01 → 2026-07-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1058 days from 2023-09-01 to 2026-07-24. Pushes: 9 total, peak 4 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 20 total, peak 2 in a day. Comments: 25 total, peak 3 in a day. Stars: 125 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| rrwick | 35 | 9 | 1 | 16 |
| hasindu2008 | 3 | 0 | 0 | 2 |
| kubracelikbas | 3 | 0 | 0 | 1 |
| stcoh | 2 | 0 | 0 | 1 |
| RDorney | 2 | 0 | 0 | 1 |
| alihamraoui | 2 | 0 | 1 | 0 |
| josiegleeson | 2 | 0 | 0 | 1 |
| HLHsieh | 1 | 0 | 0 | 1 |
| junhaiqi | 1 | 0 | 0 | 0 |
| jyw-atgithub | 1 | 0 | 0 | 0 |
| SoSongzhi | 1 | 0 | 0 | 1 |
| jasperverwilt | 1 | 0 | 0 | 0 |
| kokyriakidis | 1 | 0 | 0 | 0 |
| shenwei356 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#40rrwick2026-04-29 01:27Coordinate system BadRead
- Issue#37jasperverwilt2025-12-10 09:44N-containing reads with glitches, random, and junk turned off
- Issue comment#31SoSongzhi2024-10-05 14:18How to handle PacBio simulated reads before mapping
- Issue comment#36rrwick2024-09-06 03:58Simulate direct RNA transcript data (5' read truncation)
- Issue comment#36josiegleeson2024-09-06 03:48Simulate direct RNA transcript data (5' read truncation)
- Issue comment#36rrwick2024-09-06 03:44Simulate direct RNA transcript data (5' read truncation)
- Issue#36rrwick2024-09-06 03:44Simulate direct RNA transcript data (5' read truncation)
- Issue#36josiegleeson2024-09-05 23:39Simulate direct RNA transcript data (5' read truncation)
- Issue comment#35kubracelikbas2024-08-19 20:01Confusion about total base sizes
- Issue comment#35rrwick2024-08-19 02:05Confusion about total base sizes
- Issue#35kubracelikbas2024-08-17 10:33Confusion about total base sizes
- Issue#35kubracelikbas2024-08-16 08:36Confusion about total base sizes
- Issue comment#33stcoh2024-06-26 16:43KeyError when running 'badread error_model'
- Issue comment#23RDorney2024-06-26 06:02Are complementary sequences simulated.
- Issue comment#34shenwei3562024-06-25 06:58Positions in the read header line are incorrect for all sequences from - strand.
- Issue comment#34rrwick2024-06-25 03:16Positions in the read header line are incorrect for all sequences from - strand.
- Issue#34rrwick2024-06-25 03:16Positions in the read header line are incorrect for all sequences from - strand.
- Issue comment#33rrwick2024-06-18 14:17KeyError when running 'badread error_model'
- Issue#33rrwick2024-06-18 14:17KeyError when running 'badread error_model'
- Issue#33stcoh2024-06-14 20:28KeyError when running 'badread error_model'
- Issue comment#32rrwick2024-05-07 04:46Update error_model.py
- Pull request#32rrwick2024-05-07 04:46
- Pull request#32alihamraoui2024-05-06 10:02
- Issue comment#31rrwick2024-04-03 03:43How to handle PacBio simulated reads before mapping
- Issue#31RDorney2024-04-03 00:52How to handle PacBio simulated reads before mapping
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 125 stars here means stars gained during the window, not the repo's star count.