a short-read polishing tool for long-read assemblies
active 2023-08-25 → 2026-05-13 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 993 days from 2023-08-25 to 2026-05-13. Pushes: 11 total, peak 2 in a day. Pull requests: 5 total, peak 1 in a day. Issues: 31 total, peak 5 in a day. Comments: 48 total, peak 5 in a day. Stars: 88 total, peak 9 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| rrwick | 64 | 11 | 3 | 32 |
| mprous1 | 6 | 0 | 0 | 3 |
| lavafroth | 6 | 0 | 2 | 3 |
| Laura-Schnell | 4 | 0 | 0 | 4 |
| zephyris | 2 | 0 | 0 | 1 |
| maoyibo | 2 | 0 | 0 | 1 |
| baku4 | 1 | 0 | 0 | 1 |
| lborcard | 1 | 0 | 0 | 1 |
| kowrithv | 1 | 0 | 0 | 1 |
| FA387 | 1 | 0 | 0 | 0 |
| gwl2 | 1 | 0 | 0 | 0 |
| schlaepferp | 1 | 0 | 0 | 0 |
| rubadevis | 1 | 0 | 0 | 1 |
| sam-grinstead | 1 | 0 | 0 | 0 |
| YannDussert | 1 | 0 | 0 | 0 |
| songjing99 | 1 | 0 | 0 | 0 |
| atiaamin2019 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#37rubadevis2026-05-13 05:47"polypolish filter" crashes with memory allocation failure despite sufficient RAM
- Issue comment#37rrwick2026-05-13 04:34"polypolish filter" crashes with memory allocation failure despite sufficient RAM
- Issue#34rrwick2025-09-19 04:17Error: could not automatically determine read pair orientation
- Issue comment#34rrwick2025-09-15 21:39Error: could not automatically determine read pair orientation
- Issue comment#34rrwick2025-09-15 02:19Error: could not automatically determine read pair orientation
- Issue comment#33rrwick2025-08-28 01:40Support CIGAR = and X for end-to-end alignment detection
- Issue comment#33rrwick2025-08-27 22:10Support CIGAR = and X for end-to-end alignment detection
- Issue comment#33baku42025-08-27 12:05Support CIGAR = and X for end-to-end alignment detection
- Pull request#33rrwick2025-08-20 05:58
- Issue comment#32rrwick2025-08-07 06:44No alignments
- Issue#32rrwick2025-08-07 06:44No alignments
- Issue#24rrwick2025-06-17 01:03Feature request: Set no/low coverage regions of short reads to N
- Issue comment#31rrwick2025-06-17 01:02Server Crash During Polypolish filter with Large Metagenomic SAM Files
- Issue#31rrwick2025-06-17 01:02Server Crash During Polypolish filter with Large Metagenomic SAM Files
- Issue#31songjing992025-06-16 01:59Server Crash During Polypolish filter with Large Metagenomic SAM Files
- Issue comment#30rrwick2025-03-27 01:43Polypolish discards all aligned reads in the filtering stage when using bbmap?
- Issue#30rrwick2025-03-27 01:43Polypolish discards all aligned reads in the filtering stage when using bbmap?
- Issue#30sam-grinstead2025-03-21 16:03Polypolish discards all aligned reads in the filtering stage?
- Issue comment#29mprous12025-01-22 07:18option for smaller Debug file
- Issue comment#29rrwick2025-01-22 01:12option for smaller Debug file
- Issue#29rrwick2025-01-22 01:12option for smaller Debug file
- Issue#29mprous12025-01-21 08:00option for smaller Debug file
- Issue comment#28mprous12025-01-03 13:50How to estimate required RAM?
- Issue#28mprous12025-01-03 13:50How to estimate required RAM?
- Issue comment#28mprous12025-01-02 08:16How to estimate required RAM?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 88 stars here means stars gained during the window, not the repo's star count.