A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
active 2023-10-13 → 2026-07-01 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 993 days from 2023-10-13 to 2026-07-01. Pushes: 21 total, peak 5 in a day. Pull requests: 18 total, peak 4 in a day. Issues: 5 total, peak 1 in a day. Comments: 38 total, peak 12 in a day. Stars: 5 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| bnjenner | 46 | 5 | 12 | 16 |
| joe-angell | 39 | 6 | 6 | 12 |
| msettles | 12 | 10 | 0 | 2 |
| samhunter | 10 | 0 | 0 | 6 |
| dstreett | 2 | 0 | 0 | 1 |
| santataRU | 2 | 0 | 0 | 1 |
| jimmyamcguire | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#268samhunter2025-04-27 22:16Bug in HTS_AdapterTrimmer: trimmed R2 sequence is no longer derived from the raw R2 input, but instead reconstructed as the reverse complement of the trimmed R1 read.
- Issue comment#268santataRU2025-04-25 11:25Bug in HTS_AdapterTrimmer: trimmed R2 sequence is no longer derived from the raw R2 input, but instead reconstructed as the reverse complement of the trimmed R1 read.
- Issue comment#268samhunter2025-04-25 07:40Bug in HTS_AdapterTrimmer: trimmed R2 sequence is no longer derived from the raw R2 input, but instead reconstructed as the reverse complement of the trimmed R1 read.
- Issue#268samhunter2025-04-25 07:40Bug in HTS_AdapterTrimmer: trimmed R2 sequence is no longer derived from the raw R2 input, but instead reconstructed as the reverse complement of the trimmed R1 read.
- Issue comment#268samhunter2025-04-25 07:08Bug in HTS_AdapterTrimmer: trimmed R2 sequence is no longer derived from the raw R2 input, but instead reconstructed as the reverse complement of the trimmed R1 read.
- Issue#268santataRU2025-04-24 18:45Bug in HTS_AdapterTrimmer: trimmed R2 sequence is no longer derived from the raw R2 input, but instead reconstructed as the reverse complement of the trimmed R1 read.
- Issue comment#262joe-angell2025-01-15 06:01Mac version available on github, via Brew, and on bioconda is outdated
- Issue#262joe-angell2025-01-15 06:01Mac version available on github, via Brew, and on bioconda is outdated
- Releasejoe-angell2025-01-15 03:55v1.4.1
- Pull request#267joe-angell2025-01-15 03:53
- Pull request#267joe-angell2025-01-15 03:52
- Pull request#266joe-angell2025-01-15 03:48
- Pull request#266joe-angell2025-01-15 03:44
- Releasejoe-angell2025-01-09 23:13v1.4.0
- Pull request#265joe-angell2025-01-09 23:10
- Pull request#265joe-angell2025-01-09 23:06
- Issue comment#264joe-angell2024-10-24 18:36More UMI Stuff (hts_ExtractUMI and hts_SuperDeduper)
- Issue comment#258joe-angell2024-10-24 18:35Issue in Common: Memory Leak in `check_open_r` (not closing file)
- Issue comment#264bnjenner2024-10-24 18:18More UMI Stuff (hts_ExtractUMI and hts_SuperDeduper)
- Pull request#264bnjenner2024-10-24 18:13
- Pull request#264bnjenner2024-09-29 19:50
- Pull request#263bnjenner2024-09-03 19:13
- Pull request#263bnjenner2024-09-03 17:55
- Issue#262jimmyamcguire2024-06-20 23:10Mac version available on github, via Brew, and on bioconda is outdated
- Issue comment#261msettles2024-06-06 17:31UMI Support for hts_SuperDeduper!
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 5 stars here means stars gained during the window, not the repo's star count.