MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
active 2023-08-16 → 2026-05-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1015 days from 2023-08-16 to 2026-05-26. Pushes: 47 total, peak 4 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 174 total, peak 6 in a day. Comments: 196 total, peak 10 in a day. Stars: 122 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| browaeysrobin | 221 | 47 | 0 | 108 |
| DarioS | 24 | 0 | 0 | 8 |
| Dalhte | 15 | 0 | 0 | 5 |
| catsargent | 6 | 0 | 0 | 4 |
| cgoneill | 6 | 0 | 0 | 4 |
| Chenium123 | 6 | 0 | 0 | 4 |
| VivianQM | 5 | 0 | 0 | 3 |
| LJZYaaa | 5 | 0 | 0 | 1 |
| maartenciers | 5 | 0 | 0 | 5 |
| TessaGillett | 5 | 0 | 0 | 4 |
| pdimitron | 5 | 0 | 0 | 2 |
| nvribeiro | 5 | 0 | 0 | 2 |
| chloebazin | 5 | 0 | 0 | 2 |
| Mialn20 | 4 | 0 | 0 | 1 |
| lchan8 | 4 | 0 | 0 | 1 |
| tian6067 | 4 | 0 | 0 | 3 |
| kaarg2 | 4 | 0 | 0 | 1 |
| jasoncrucify | 4 | 0 | 0 | 2 |
| Git535323 | 3 | 0 | 0 | 1 |
| lagom2728 | 3 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#121maartenciers2026-02-26 07:26MultiNicheNet Tutorial Confusion: Which One for Unpaired but Big Data?
- Issue#121ManyeeLui2025-12-11 02:25MultiNicheNet Tutorial Confusion: Which One for Unpaired but Big Data?
- Issue comment#110jasoncrucify2025-10-31 15:37Orig.Ident issue while displaying pseudobulk data
- Issue comment#79FerrenaAlexander2025-08-20 14:17Condition-specific cell types error at get_DE_info()
- Pull request#116zyllifeworld2025-08-12 09:50
- Issue comment#79browaeysrobin2025-08-12 08:54Condition-specific cell types error at get_DE_info()
- Issue#79browaeysrobin2025-08-12 07:41Condition-specific cell types error at get_DE_info()
- Issue comment#115browaeysrobin2025-08-05 14:19How to compare two datasets with no matching samples?
- Issue comment#115hchintalapudi2025-08-05 13:00How to compare two datasets with no matching samples?
- Issue comment#114browaeysrobin2025-08-05 09:19Study batch ID as sample
- Issue#114browaeysrobin2025-08-05 09:19Study batch ID as sample
- Issue comment#20NicolaasVanRenne2025-07-05 08:54Issue with parallelization of `get_ligand_activities_targets_DEgenes` on some systems
- Issue comment#113EspressoKris2025-06-26 15:39Error in get_ligand_activities_targets_DEgenes()
- Issue#113nvribeiro2025-06-17 12:59Error in get_ligand_activities_targets_DEgenes()
- Issue comment#112browaeysrobin2025-05-13 12:23Pseudobulking with low number of cells and taking mean values instead of sum
- Issue comment#112kiwipeel2025-05-08 17:35Pseudobulking with low number of cells and taking mean values instead of sum
- Issue comment#111browaeysrobin2025-05-08 13:19Model inter-environment ligand-receptor interactions
- Issue comment#112browaeysrobin2025-05-08 13:17Pseudobulking with low number of cells and taking mean values instead of sum
- Issue#109browaeysrobin2025-05-08 13:16Each group interaction information
- Issue#112kiwipeel2025-05-08 00:16Pseudobulking with low number of cells and taking mean values instead of sum
- Issue#110jasoncrucify2025-04-15 20:48Orig.Ident issue while displaying pseudobulk data
- Issue comment#109browaeysrobin2025-04-08 15:32Each group interaction information
- Issue#109lagom27282025-03-31 15:12Each group interaction information
- Issue comment#107browaeysrobin2025-03-11 15:31Request for Guidance on Customizing the Ligand-Receptor Database in MultiNicheNet
- Issue comment#106browaeysrobin2025-03-11 15:26Error in combing DE information for ligand-senders and receptors-receivers
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 122 stars here means stars gained during the window, not the repo's star count.