C library for high-throughput sequencing data formats
active 2025-01-25 → 2026-07-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 546 days from 2025-01-25 to 2026-07-24. Pushes: 38 total, peak 3 in a day. Pull requests: 41 total, peak 3 in a day. Issues: 25 total, peak 2 in a day. Comments: 70 total, peak 5 in a day. Stars: 51 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| daviesrob | 70 | 19 | 13 | 23 |
| whitwham | 28 | 10 | 6 | 8 |
| jkbonfield | 26 | 4 | 7 | 13 |
| vasudeva8 | 19 | 4 | 4 | 4 |
| jmarshall | 18 | 0 | 2 | 9 |
| pd3 | 9 | 1 | 2 | 3 |
| jlaungos | 2 | 0 | 0 | 2 |
| cjw85 | 2 | 0 | 1 | 1 |
| caenrigen | 2 | 0 | 0 | 1 |
| blawrence-ont | 2 | 0 | 1 | 1 |
| ivan-adzhubey | 1 | 0 | 0 | 0 |
| julianhess | 1 | 0 | 1 | 0 |
| ryandesign | 1 | 0 | 0 | 1 |
| JulianDicken | 1 | 0 | 0 | 1 |
| noporpoise | 1 | 0 | 1 | 0 |
| Patricie34 | 1 | 0 | 0 | 1 |
| pettyalex | 1 | 0 | 0 | 1 |
| matt-sexton | 1 | 0 | 0 | 0 |
| marc-sturm | 1 | 0 | 0 | 0 |
| yr542 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#2044whitwham2026-07-02 15:22Update the news to clarify S3 bug fix.
- Pull request#2038daviesrob2026-06-17 15:54
- Issue#2021Carmel02026-05-26 18:54CRAM: uninitialized output size passed to ARITH no-size decoder
- Pull request#2017fabwa2026-05-22 19:00
- Issue comment#2008jkbonfield2026-05-20 13:57Make faidx work with very long (>4 Gbyte!) lines
- Pull request#2011carstenerickson2026-05-16 19:14
- Pull request#1999jkbonfield2026-04-20 10:34
- Issue comment#1814pettyalex2026-04-02 15:18Google Cloud Storage hFILE not using multipart / resumable uploads or downloads for reliability
- Issue#1995daviesrob2026-04-02 10:17tabix: ambiguous help for --end?
- Pull request#1993jkbonfield2026-03-30 10:32
- Pull request#1990daviesrob2026-03-13 17:19
- Issue comment#1987whitwham2026-03-13 10:17Add retry/resilience for libcurl HTTP backend
- Pull request#1986vasudeva82026-02-05 10:59
- Pull request#1984whitwham2026-02-02 11:43
- Pull request#1982daviesrob2026-01-27 14:31
- Pull request#1981daviesrob2026-01-19 11:57
- Issue comment#1981daviesrob2026-01-19 11:56Added extra overrun detection in BYTE_ARRAY_LEN decoder.
- Issue comment#1974daviesrob2025-12-18 14:11Add API functions to parse and format SEQ and QUAL fields
- Pull request#1976daviesrob2025-12-10 09:52
- Pull request#1976jkbonfield2025-12-09 16:43
- Issue#1971whitwham2025-12-04 16:281.22 functions missing from htslib.map
- Pull request#1975daviesrob2025-12-04 16:28
- Issue#1670whitwham2025-12-04 11:05htslib in pysam.fetch on S3 Bucket
- Issue comment#1973jkbonfield2025-12-01 10:13Don't drop in-flight decode jobs when seeking in cram_next_slice()
- Pull request#1974jmarshall2025-11-26 03:32
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 51 stars here means stars gained during the window, not the repo's star count.