R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
active 2023-08-15 → 2026-06-30 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1051 days from 2023-08-15 to 2026-06-30. Pushes: 1,008 total, peak 25 in a day. Pull requests: 20 total, peak 2 in a day. Issues: 219 total, peak 7 in a day. Comments: 435 total, peak 20 in a day. Stars: 149 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| samuel-marsh | 1.4K | 1K | 17 | 280 |
| mvfki | 14 | 0 | 0 | 14 |
| theAeon | 13 | 0 | 0 | 11 |
| joshuak94 | 11 | 0 | 0 | 10 |
| denvercal1234GitHub | 9 | 0 | 0 | 5 |
| ishwarvh | 8 | 0 | 0 | 5 |
| charlotteharken | 7 | 0 | 0 | 6 |
| jjia1 | 7 | 0 | 0 | 6 |
| jasonleongbio | 6 | 0 | 0 | 3 |
| rasing02 | 6 | 0 | 0 | 5 |
| mcar06 | 6 | 0 | 0 | 6 |
| mph270 | 6 | 0 | 0 | 3 |
| eblchen | 6 | 0 | 0 | 5 |
| CroixJeremy2 | 5 | 0 | 0 | 1 |
| wwzhang | 5 | 0 | 0 | 3 |
| yojetsharma | 4 | 0 | 0 | 3 |
| palbioinfor | 4 | 0 | 0 | 3 |
| peculiar97 | 4 | 0 | 0 | 3 |
| johnminglu | 4 | 0 | 0 | 3 |
| brainfo | 3 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#267CroixJeremy22026-06-15 18:33The assay parameter inside FeaturePlot_scCustom() does not work properly when combined with the split.by parameter
- Issue#265Pereira-Lab-UF2026-05-23 18:40Figure_Plot drops panels when input is a multi-panel patchwork (figure_plot = TRUE + split.by)
- Issue comment#261samuel-marsh2026-02-11 13:53Issue loading multiple raw_feature_bc_matrix.h5 files with Read10X_h5_Multi_Directory()
- Issue#261samuel-marsh2026-02-11 13:53Issue loading multiple raw_feature_bc_matrix.h5 files with Read10X_h5_Multi_Directory()
- Issue#259samuel-marsh2026-01-08 22:57Clarification on splitting by sample for running `scCustomize::Add_Cell_QC_Metrics`
- Issue comment#259samuel-marsh2026-01-08 22:57Clarification on splitting by sample for running `scCustomize::Add_Cell_QC_Metrics`
- Issue#259denvercal1234GitHub2026-01-08 20:48Clarification on splitting by sample for running `scCustomize::Add_Cell_QC_Metrics`
- Issue#256samuel-marsh2025-12-16 14:53cells argument in DimPlot_scCustom
- Issue comment#256samuel-marsh2025-12-16 14:52cells argument in DimPlot_scCustom
- Issue comment#256samuel-marsh2025-12-11 19:39cells argument in DimPlot_scCustom
- Issue comment#256mcar062025-12-01 22:07cells argument in DimPlot_scCustom
- Issue#254samuel-marsh2025-11-12 14:50Tab Completion doesn't work in R Interactive console (VS Code) with scCustomize
- Issue comment#254samuel-marsh2025-11-12 14:50Tab Completion doesn't work in R Interactive console (VS Code) with scCustomize
- Issue#3samuel-marsh2025-11-08 02:26Added features for `Percent_Expressing`
- Issue#1samuel-marsh2025-11-08 02:25New Features/Enhancements in Development
- Issue comment#1samuel-marsh2025-11-08 02:25New Features/Enhancements in Development
- Issue#252samuel-marsh2025-11-07 16:09Release Prep 3.3.0
- Issue#252samuel-marsh2025-11-07 16:09Release Prep 3.3.0
- Issue#251samuel-marsh2025-10-30 22:28Update/Check ggplot2 4.0.0 Compatibility (For release v3.3.0)
- Issue#251samuel-marsh2025-10-30 22:28Update/Check ggplot2 4.0.0 Compatibility (For release v3.3.0)
- Issue#251samuel-marsh2025-10-30 22:28Update/Check ggplot2 4.0.0 Compatibility (For release v3.3.0)
- Issue#251samuel-marsh2025-10-30 22:28Update/Check ggplot2 4.0.0 Compatibility (For release v3.3.0)
- Issue#251samuel-marsh2025-10-30 22:28Update/Check ggplot2 4.0.0 Compatibility (For release v3.3.0)
- Issue#251samuel-marsh2025-10-30 22:28Update/Check ggplot2 4.0.0 Compatibility (For release v3.3.0)
- Issue#251samuel-marsh2025-10-30 22:28Update/Check ggplot2 4.0.0 Compatibility (For release v3.3.0)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 149 stars here means stars gained during the window, not the repo's star count.