Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
active 2023-09-21 → 2025-09-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 737 days from 2023-09-21 to 2025-09-26. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 8 total, peak 2 in a day. Comments: 14 total, peak 2 in a day. Stars: 13 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| SaelinB | 3 | 0 | 0 | 2 |
| Dogrinev | 3 | 0 | 0 | 3 |
| YocelynG | 2 | 0 | 0 | 2 |
| BRNiu | 2 | 0 | 0 | 2 |
| avilella | 1 | 0 | 0 | 0 |
| xizhesun | 1 | 0 | 0 | 1 |
| bennuru | 1 | 0 | 0 | 1 |
| KaiLi-KL | 1 | 0 | 0 | 1 |
| jaehakson | 1 | 0 | 0 | 0 |
| asan-emirsaleh | 1 | 0 | 0 | 0 |
| sogriffin98 | 1 | 0 | 0 | 0 |
| OZTaekOppa | 1 | 0 | 0 | 0 |
| xiekunwhy | 1 | 0 | 0 | 1 |
| pbpearman | 1 | 0 | 0 | 1 |
| Delaney-Nash | 1 | 0 | 0 | 0 |
| pclee2007 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#19KaiLi-KL2025-09-26 15:41pandas error at the scaffolding stage
- Issue#19asan-emirsaleh2025-03-25 09:53pandas error at the scaffolding stage
- Issue comment#4BRNiu2025-03-05 14:13large genome changes
- Issue comment#4BRNiu2024-12-25 11:19large genome changes
- Issue comment#14pbpearman2024-10-05 13:38pipeline crashed : scaffold (numpy.core._exceptions._ArrayMemoryError)
- Issue comment#17Dogrinev2024-01-25 16:00Issue with gapless.py extend
- Issue comment#18Dogrinev2024-01-25 15:58Gapless extend local variable error
- Issue comment#18Dogrinev2024-01-24 21:28Gapless extend local variable error
- Issue comment#17SaelinB2024-01-17 00:47Issue with gapless.py extend
- Issue comment#18SaelinB2024-01-17 00:46Gapless extend local variable error
- Issue#18SaelinB2024-01-13 06:39Gapless extend local variable error
- Issue#17pclee20072023-12-22 11:23Issue with gapless.py extend
- Issue#16Delaney-Nash2023-11-24 03:26issue with scaffolding step
- Issue comment#13YocelynG2023-11-14 19:52pipeline crashed: extend
- Issue comment#11YocelynG2023-11-14 19:38AttributeError: 'DataFrame' object has no attribute 'append'
- Issue comment#8xiekunwhy2023-11-06 09:15Can I use only GAPLESS to fill the gap?
- Issue#15avilella2023-10-20 10:35gapless on a small region of a mammalian genome
- Issue#14jaehakson2023-10-20 02:40pipeline crashed : scaffold (numpy.core._exceptions._ArrayMemoryError)
- Issue#13sogriffin982023-10-10 10:25pipeline crashed: extend
- Issue comment#11bennuru2023-09-27 18:42AttributeError: 'DataFrame' object has no attribute 'append'
- Issue#12OZTaekOppa2023-09-22 05:10Polishing both reads (Hifi and ONT)
- Issue comment#8xizhesun2023-09-21 01:05Can I use only GAPLESS to fill the gap?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 13 stars here means stars gained during the window, not the repo's star count.