Implementation of CellNEST method
active 2024-12-08 → 2026-06-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 563 days from 2024-12-08 to 2026-06-23. Pushes: 210 total, peak 44 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 21 total, peak 2 in a day. Comments: 28 total, peak 6 in a day. Stars: 33 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| anne04 | 221 | 210 | 0 | 10 |
| ywzhang071394 | 5 | 0 | 0 | 3 |
| OMIC-coding | 4 | 0 | 0 | 3 |
| Sawakotx | 3 | 0 | 0 | 1 |
| shippp-zz | 3 | 0 | 0 | 3 |
| CollapsarSpectrum | 2 | 0 | 0 | 2 |
| litun-fkby | 2 | 0 | 0 | 0 |
| Silaschuwen | 2 | 0 | 0 | 0 |
| cindyway | 2 | 0 | 0 | 0 |
| lh12565 | 2 | 0 | 0 | 1 |
| Nick-Eagles | 1 | 0 | 0 | 0 |
| Ron-bio | 1 | 0 | 0 | 0 |
| pranavarra | 1 | 0 | 0 | 1 |
| pikapika505 | 1 | 0 | 0 | 1 |
| Jarrett204 | 1 | 0 | 0 | 0 |
| alyonaivanova22 | 1 | 0 | 0 | 1 |
| DDDoGGie | 1 | 0 | 0 | 0 |
| wyywyy999 | 1 | 0 | 0 | 0 |
| alexch-liu | 1 | 0 | 0 | 0 |
| Weicheng-Gu | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#34DDDoGGie2026-02-10 02:59Small suggestion: avoid sparse-to-dense conversion to prevent CUDA OOM
- Issue comment#32pikapika5052026-02-06 17:08output_graph_picture output is not readable
- Issue comment#29alyonaivanova222025-12-17 20:47Singularity image pulling issue
- Issue#30visanuwan2025-12-06 16:52P-value script issue
- Issue#28wyywyy9992025-09-28 08:11Question about the large number of training epochs (60k or 80k) in the example
- Issue#27Weicheng-Gu2025-09-22 07:13How to construct synthetic data
- Issue#26Ron-bio2025-08-31 01:48Issue with CCC edges only within spots when using deconvoluted data (Cytospace output: same coordinates for multiple cells)
- Issue#24litun-fkby2025-08-29 06:37the seed for train model
- Issue comment#23Sawakotx2025-08-28 12:44Improve visualization functions
- Issue#24litun-fkby2025-08-23 13:08the seed for train model
- Issue comment#23OMIC-coding2025-08-14 16:29Improve visualization functions
- Issue comment#23anne042025-08-14 16:15Improve visualization functions
- Issue#23OMIC-coding2025-08-14 15:58Improve visualization functions
- Issue comment#22OMIC-coding2025-08-14 15:53How to run CellNEST_interactive on a remote server without xdg-open, and access via browser URL/port ?
- Issue#22Sawakotx2025-08-13 13:59How to run CellNEST_interactive on a remote server without xdg-open, and access via browser URL/port ?
- Issue#21alexch-liu2025-08-08 20:15cellnest preprocess does not output input_graph folder
- Issue comment#15lh125652025-07-23 02:53NameError: name 'cell_barcode' is not defined
- Issue#7cindyway2025-07-16 07:29Tutorial on Generating Synthetic Data
- Issue comment#12anne042025-07-14 14:26cellnest did not use CUDA
- Issue comment#4CollapsarSpectrum2025-07-13 08:00CUDA Out of Memory Error During NEST Run Procedure
- Issue comment#7anne042025-07-11 15:24Tutorial on Generating Synthetic Data
- Issue comment#4anne042025-07-11 15:03CUDA Out of Memory Error During NEST Run Procedure
- Issue comment#12anne042025-07-11 14:36cellnest did not use CUDA
- Issue comment#16anne042025-07-11 14:06singularity bind question
- Issue comment#17CollapsarSpectrum2025-07-10 14:01database for mouse
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 33 stars here means stars gained during the window, not the repo's star count.