A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
active 2025-12-15 → 2026-07-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 218 days from 2025-12-15 to 2026-07-20. Pushes: 13 total, peak 2 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 2 total, peak 1 in a day. Comments: 9 total, peak 5 in a day. Stars: 9 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| grst | 8 | 2 | 2 | 3 |
| pre-commit-ci[bot] | 7 | 7 | 0 | 0 |
| BorisMuzellec | 5 | 3 | 0 | 0 |
| Zethson | 3 | 1 | 0 | 0 |
| Copilot | 2 | 0 | 0 | 1 |
| maltekuehl | 2 | 0 | 1 | 1 |
| maflot | 1 | 0 | 0 | 1 |
| Ekin-Kahraman | 1 | 0 | 0 | 1 |
| ilan-gold | 1 | 0 | 0 | 1 |
| victorsanchezarevalo | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#445maflot2026-04-21 07:34Feature/gpu inference
- Issue comment#442Ekin-Kahraman2026-04-11 12:32docs: fix broken intersphinx links
- Issue#428Zethson2026-01-23 14:09Setup trusted publishing on PyPI
- Pull request#438grst2026-01-23 14:09
- Pull request#436maltekuehl2026-01-23 08:35
- Issue comment#429grst2026-01-23 08:33Move to scverse cookiecutter template
- Issue comment#436maltekuehl2026-01-23 08:29Fix pandas 3 data type and copy/write bugs
- Issue comment#401victorsanchezarevalo2026-01-10 07:29Timeline for factor interactions implementation
- Pull request#430grst2025-12-15 15:01
- Issue#429grst2025-12-15 14:57Move to scverse cookiecutter template
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.