Single-cell analysis in Python. Scales to >1M cells.
active 2025-01-23 → 2026-08-04 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 559 days from 2025-01-23 to 2026-08-04. Pushes: 566 total, peak 18 in a day. Pull requests: 206 total, peak 9 in a day. Issues: 193 total, peak 9 in a day. Comments: 352 total, peak 13 in a day. Stars: 175 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| flying-sheep | 654 | 364 | 95 | 90 |
| ilan-gold | 238 | 146 | 16 | 43 |
| codecov[bot] | 63 | 0 | 0 | 63 |
| Zethson | 54 | 6 | 3 | 19 |
| scverse-bot | 31 | 0 | 1 | 0 |
| pre-commit-ci[bot] | 29 | 14 | 15 | 0 |
| meeseeksmachine | 22 | 0 | 22 | 0 |
| dependabot[bot] | 15 | 0 | 15 | 0 |
| lumberbot-app[bot] | 13 | 0 | 0 | 13 |
| Intron7 | 13 | 8 | 0 | 4 |
| zboldyga | 8 | 0 | 3 | 3 |
| maltekuehl | 7 | 0 | 2 | 4 |
| mumichae | 6 | 0 | 0 | 2 |
| joe-jhou2 | 5 | 0 | 1 | 3 |
| grst | 4 | 0 | 1 | 1 |
| selmanozleyen | 4 | 0 | 0 | 2 |
| Ekin-Kahraman | 4 | 0 | 2 | 2 |
| c0nleyinnnn | 4 | 0 | 0 | 3 |
| krkawzq | 4 | 0 | 0 | 4 |
| jpintar | 3 | 0 | 1 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#3576flying-sheep2026-07-27 14:59Default legend when scaling dotplots
- Issue#1280Zethson2026-07-16 06:38pip install scanpy[rapids] fails as cuML requirement cannot be met
- Pull request#4196AxelMcKenna2026-07-04 07:45
- Issue comment#4184codecov[bot]2026-06-27 01:35fixes inconsist variance output between in-memory and dask for groups of size 1
- Issue#4172scverse-issue-creator[bot]2026-06-24 03:07Integration Testing CI Test Failure on python 3.12
- Issue comment#4168codecov[bot]2026-06-22 08:32docs: add inline example for pca_scatter
- Pull request#4146dependabot[bot]2026-06-08 03:23
- Pull request#4146dependabot[bot]2026-06-08 03:23
- Issue comment#4114ilan-gold2026-06-03 11:18wilcoxon DE, vs_all_perturbed
- Issue comment#4095zboldyga2026-05-17 18:02Automatically using Dask for large datasets when necessary
- Issue comment#4110ilan-gold2026-05-16 21:18Investigate `networkit` (for `leiden` implementation)
- Issue comment#4114ilan-gold2026-05-16 11:18wilcoxon DE, vs_all_perturbed
- Issue#4120scverse-issue-creator[bot]2026-05-13 03:01Integration Testing CI Test Failure on python 3.12
- Pull request#4118zboldyga2026-05-11 23:46
- Pull request#4112flying-sheep2026-05-08 10:16
- Issue comment#4102zboldyga2026-05-07 21:21Zb/illico fixes
- Issue comment#4095timtreis2026-04-29 11:55Automatically using Dask for large datasets when necessary
- Pull request#4090zboldyga2026-04-28 08:36
- Issue comment#4090zboldyga2026-04-27 18:44perf: hoist _tiecorrect out of per-group loop in vs-rest Wilcoxon
- Issue comment#4090codecov[bot]2026-04-25 02:39perf: hoist _tiecorrect out of per-group loop in vs-rest Wilcoxon
- Pull request#4090zboldyga2026-04-25 02:32
- Pull request#4086meeseeksmachine2026-04-24 08:26
- Pull request#4085meeseeksmachine2026-04-24 08:25
- Issue comment#4070ilaykav2026-04-23 23:04perf: Combat perf improvements
- Pull request#4082JhonatanFelix2026-04-23 09:14
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 175 stars here means stars gained during the window, not the repo's star count.