An open and interoperable data framework for spatial omics data
active 2024-09-15 → 2026-08-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 690 days from 2024-09-15 to 2026-08-05. Pushes: 246 total, peak 12 in a day. Pull requests: 97 total, peak 8 in a day. Issues: 108 total, peak 6 in a day. Comments: 340 total, peak 23 in a day. Stars: 48 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| LucaMarconato | 418 | 126 | 48 | 150 |
| melonora | 197 | 65 | 23 | 67 |
| codecov[bot] | 41 | 0 | 0 | 41 |
| pre-commit-ci[bot] | 30 | 25 | 5 | 0 |
| timtreis | 20 | 17 | 1 | 0 |
| Copilot | 13 | 2 | 1 | 4 |
| quentinblampey | 8 | 0 | 3 | 5 |
| giovp | 8 | 1 | 0 | 4 |
| flying-sheep | 8 | 6 | 0 | 2 |
| Zethson | 8 | 1 | 1 | 4 |
| scverse-bot | 7 | 0 | 0 | 0 |
| selmanozleyen | 7 | 0 | 1 | 2 |
| ilan-gold | 6 | 0 | 0 | 5 |
| srivarra | 5 | 0 | 2 | 2 |
| m-albert | 5 | 0 | 1 | 2 |
| grst | 4 | 0 | 0 | 1 |
| j-bac | 4 | 0 | 0 | 2 |
| keller-mark | 4 | 0 | 2 | 1 |
| aeisenbarth | 4 | 0 | 1 | 3 |
| MSHelm | 4 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#1106LucaMarconato2026-05-12 14:54Support sharding through config and raster_write_kwargs
- Issue comment#1124codecov[bot]2026-05-11 16:14Split `SpatialData` objects via `deconcatenate()`
- Pull request#1097LucaMarconato2026-05-11 10:55
- Issue comment#1119flying-sheep2026-05-08 11:49Integration Testing CI Test Failure on python 3.12
- Issue comment#1119LucaMarconato2026-05-08 11:48Integration Testing CI Test Failure on python 3.12
- Issue#1119scverse-issue-creator[bot]2026-05-08 02:45Integration Testing CI Test Failure on python 3.12
- Issue#1110scverse-issue-creator[bot]2026-05-01 02:56Integration Testing CI Test Failure on python 3.12
- Issue comment#1102LucaMarconato2026-03-26 21:56fix: don't lower bound `anndata` so high
- Pull request#1083LucaMarconato2026-03-19 22:31
- Issue comment#1092LucaMarconato2026-03-19 22:29ome zarr chunks
- Issue comment#1092LucaMarconato2026-03-19 22:18ome zarr chunks
- Issue comment#1093enric-bazz2026-03-13 13:00`PointsModel.parse()` fails with `AttributeError: 'DataFrame' object has no attribute 'attrs'`
- Issue#1093enric-bazz2026-03-12 18:33`PointsModel.parse()` fails when `feature_key` and `instance_key` are omitted
- Issue comment#1088codecov[bot]2026-03-09 03:40Preserve attrs on Dask DataFrame sample()
- Pull request#1088LiudengZhang2026-03-09 03:30
- Issue comment#1085LucaMarconato2026-03-02 17:08MuData Table for SpatialData object
- Issue comment#1083codecov[bot]2026-03-01 21:07Change lower bound anndata
- Issue comment#1082zqxiao20012026-02-28 14:18unable to save the spatialdata object in zarr format file
- Issue#1081MeyerBender2026-02-27 08:07Zarr-python should be pinned to >=3.0.0
- Issue comment#855ziyuanzhao20002026-02-25 05:25Enable partial reading for specific subsets of elements
- Issue comment#1080codecov[bot]2026-02-24 22:47Fix performance regression for multiscale images (#1079)
- Pull request#1075LucaMarconato2026-02-24 22:26
- Pull request#1075LucaMarconato2026-02-24 22:26
- Pull request#1075LucaMarconato2026-02-24 22:25
- Pull request#1080LucaMarconato2026-02-24 21:49
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 48 stars here means stars gained during the window, not the repo's star count.