fixed `from_legacy_anndata`
active 2024-05-25 → 2026-06-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 745 days from 2024-05-25 to 2026-06-08. Pushes: 105 total, peak 5 in a day. Pull requests: 59 total, peak 3 in a day. Issues: 67 total, peak 5 in a day. Comments: 218 total, peak 14 in a day. Stars: 20 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| LucaMarconato | 263 | 75 | 37 | 106 |
| pre-commit-ci[bot] | 25 | 22 | 3 | 0 |
| codecov-commenter | 16 | 0 | 0 | 16 |
| stephenwilliams22 | 11 | 0 | 0 | 9 |
| melonora | 10 | 0 | 3 | 3 |
| joshmoore | 8 | 0 | 0 | 6 |
| timtreis | 7 | 3 | 0 | 2 |
| ddiez | 7 | 0 | 0 | 6 |
| Copilot | 7 | 3 | 1 | 1 |
| wangjiawen2013 | 7 | 0 | 0 | 7 |
| MSHelm | 6 | 0 | 2 | 3 |
| hannahaichelman | 5 | 0 | 0 | 5 |
| gboscagli | 5 | 0 | 0 | 2 |
| lucas-diedrich | 5 | 0 | 1 | 3 |
| Yifan-debug | 5 | 0 | 0 | 4 |
| alexanderchang1 | 4 | 0 | 0 | 3 |
| quentinblampey | 4 | 1 | 1 | 1 |
| pryvkin10x | 4 | 0 | 2 | 1 |
| z-spider | 3 | 0 | 0 | 3 |
| liz-is | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue#398LucaMarconato2026-05-15 21:19Preserve `.index.name == 'cell_id'` for `xenium()` shapes
- Pull request#399LucaMarconato2026-05-15 21:13
- Issue comment#379LucaMarconato2026-05-07 11:24MACSIMA parse subfolders only when explicitly requested
- Issue#396matthieuheitz2026-05-06 01:54Rectilinear chunks in Xenium?
- Issue comment#321codecov-commenter2026-05-05 08:04Align CLI arguments with reader APIs for full parameter consistency
- Issue#384ogandril2026-03-10 07:49BMKS300
- Pull request#383Tobiaspk2026-03-05 22:20
- Issue#382Tobiaspk2026-03-05 22:19Bug: Visium HD reader has hardcoded scale factors for full-res images
- Issue comment#381LucaMarconato2026-03-05 17:32Deconcatenate SpatialData to legacy AnnData objects
- Pull request#380pre-commit-ci[bot]2026-03-02 17:59
- Issue comment#374nilchia2026-02-26 14:44CODEX reader: TypeError: SpatialData.__init__() got an unexpected keyword argument 'table'
- Pull request#373LucaMarconato2026-02-24 22:33
- Issue comment#374LucaMarconato2026-02-24 20:11CODEX reader: TypeError: SpatialData.__init__() got an unexpected keyword argument 'table'
- Pull request#358pre-commit-ci[bot]2026-02-17 18:19
- Issue comment#366MSHelm2026-02-17 12:42macsima reader fails on experimental data due to inconsistent image dimensions
- Pull request#371MSHelm2026-02-17 12:41
- Issue comment#369LucaMarconato2026-02-09 09:39Xenium avoid calling `get_element_instances()`; fix deprecation warning
- Issue comment#369codecov-commenter2026-02-06 13:39Xenium fix assert shapes id
- Issue#366LucaMarconato2026-02-04 10:32macsima reader fails on experimental data due to inconsistent image dimensions
- Issue comment#366nbonine2026-02-04 10:27macsima reader fails on experimental data due to inconsistent image dimensions
- Issue comment#365codecov-commenter2026-02-03 17:33Faster xenium polygon parsing via ragged arrays
- Pull request#363LucaMarconato2026-02-03 14:29
- Issue comment#361stephenwilliams222026-02-02 16:55Error with spatialdata_io.xenium() reader
- Issue comment#362LucaMarconato2026-02-01 16:15Error reading Xenium data: morphology file missing
- Pull request#279lucas-diedrich2026-01-18 17:09
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 20 stars here means stars gained during the window, not the repo's star count.