Tutorials for Squidpy
active 2023-09-17 → 2026-02-13 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 881 days from 2023-09-17 to 2026-02-13. Pushes: 49 total, peak 5 in a day. Pull requests: 30 total, peak 4 in a day. Issues: 15 total, peak 2 in a day. Comments: 56 total, peak 6 in a day. Stars: 12 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| giovp | 36 | 14 | 10 | 10 |
| timtreis | 28 | 13 | 7 | 3 |
| review-notebook-app[bot] | 20 | 0 | 0 | 20 |
| LLehner | 14 | 7 | 4 | 2 |
| LucaMarconato | 14 | 0 | 0 | 7 |
| selmanozleyen | 14 | 8 | 2 | 2 |
| ilan-gold | 7 | 2 | 4 | 1 |
| Silaschuwen | 3 | 0 | 0 | 3 |
| melonora | 2 | 2 | 0 | 0 |
| amonell | 2 | 0 | 0 | 2 |
| npeschke | 2 | 2 | 0 | 0 |
| alanocallaghan | 2 | 0 | 0 | 1 |
| MikeWLloyd | 2 | 0 | 0 | 2 |
| flying-sheep | 1 | 1 | 0 | 0 |
| estellad | 1 | 0 | 0 | 0 |
| realzehuali | 1 | 0 | 0 | 0 |
| mossishahi | 1 | 0 | 1 | 0 |
| emir-radkevich | 1 | 0 | 1 | 0 |
| Hagibaer | 1 | 0 | 0 | 1 |
| caiquanyou | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#156schrf2026-02-13 10:30
- Issue comment#155review-notebook-app[bot]2025-12-14 17:30Remove napari interactive from the notebooks
- Pull request#151selmanozleyen2025-09-30 12:04
- Pull request#148selmanozleyen2025-07-09 09:22
- Issue#147selmanozleyen2025-06-30 23:19`compute_crops.ipynb` fails because it uses deprecated ` crop_corner.interactive(adata_crop)`
- Issue comment#122selmanozleyen2025-06-30 23:16ValueError: After removing rows with only NaN interactions, none remain.
- Issue#122selmanozleyen2025-06-30 23:16ValueError: After removing rows with only NaN interactions, none remain.
- Issue comment#123selmanozleyen2025-06-30 23:15ValueError with calculate_image_features() in tutorial_visium_hne.ipynb
- Issue#145timtreis2025-05-27 09:35Clarification on channel_cellpose index and RGB channel mapping in sq.im.segment
- Pull request#146timtreis2025-05-27 09:35
- Issue comment#145timtreis2025-04-30 23:35Clarification on channel_cellpose index and RGB channel mapping in sq.im.segment
- Issue comment#146review-notebook-app[bot]2025-04-30 23:33improved clarity of cellpose notebook
- Pull request#146timtreis2025-04-30 23:33
- Issue#145Ketomihine2025-04-30 22:36Clarification on channel_cellpose index and RGB channel mapping in sq.im.segment
- Issue comment#144review-notebook-app[bot]2025-04-27 00:56Added neighborhood analysis .ipynb external tutorial
- Pull request#144emir-radkevich2025-04-27 00:56
- Issue comment#143review-notebook-app[bot]2025-03-28 22:24Add notebook illustration cp-measure based featurisation
- Pull request#143timtreis2025-03-28 22:24
- Issue#120alanocallaghan2025-03-17 13:33environment.yml is missing
- Issue comment#142review-notebook-app[bot]2025-03-10 23:44mvp
- Pull request#142timtreis2025-03-10 23:44
- Pull request#141mossishahi2025-02-26 13:33
- Issue#135LLehner2024-11-07 20:18Issue with Xenium Tutorial Notebook
- Pull request#140LLehner2024-11-07 20:18
- Issue comment#140review-notebook-app[bot]2024-11-07 20:17Fix typo in Xenium tutorial
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.