phasing and Allele Specific Expression from RNA-seq
active 2023-09-18 → 2026-04-21 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 947 days from 2023-09-18 to 2026-04-21. Pushes: 22 total, peak 20 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 14 total, peak 1 in a day. Comments: 25 total, peak 3 in a day. Stars: 31 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| secastel | 38 | 22 | 2 | 8 |
| netwon123 | 3 | 0 | 0 | 2 |
| FunongLuo | 3 | 0 | 0 | 2 |
| aswathyseb | 3 | 0 | 0 | 1 |
| zzzzzd0825 | 3 | 0 | 0 | 3 |
| yybgood | 2 | 0 | 0 | 2 |
| pettyalex | 2 | 0 | 1 | 1 |
| everestial | 2 | 0 | 0 | 2 |
| lintingyi2014 | 2 | 0 | 0 | 2 |
| xdp7997 | 1 | 0 | 0 | 1 |
| chenquanzhen123 | 1 | 0 | 0 | 0 |
| Yang-Yingshan | 1 | 0 | 0 | 0 |
| Soymethylation | 1 | 0 | 0 | 1 |
| chrbianchini | 1 | 0 | 0 | 0 |
| Youpu-Chen | 1 | 0 | 0 | 0 |
| paulocaldas | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#42everestial2026-01-19 22:47Allele specific expression on multiple samples
- Issue comment#42xdp79972026-01-19 09:15Allele specific expression on multiple samples
- Issue comment#42everestial2026-01-18 23:50Allele specific expression on multiple samples
- Issue#89Youpu-Chen2025-11-23 13:16Question about the application in long-read RNA-seq
- Issue comment#88secastel2025-10-03 14:52Question Regarding Discrepancy Between phaser_gene_ae.txt and haplotypic_counts.txt Outputs
- Issue#88secastel2025-10-03 14:52Question Regarding Discrepancy Between phaser_gene_ae.txt and haplotypic_counts.txt Outputs
- Issue#88chenquanzhen1232025-06-04 02:35Question Regarding Discrepancy Between phaser_gene_ae.txt and haplotypic_counts.txt Outputs
- Issue comment#78zzzzzd08252025-04-01 09:49Error in using phaser_gene_ae.py
- Issue comment#85zzzzzd08252025-04-01 06:28Error in phaser_gene_ae.py
- Issue comment#85netwon1232025-04-01 01:38Error in phaser_gene_ae.py
- Issue comment#85zzzzzd08252025-03-31 15:05Error in phaser_gene_ae.py
- Issue#87secastel2025-03-26 12:01Strand Specific Information when running gene_ae
- Issue#87paulocaldas2025-03-10 16:23Strand Specific Information when running gene_ae
- Issue#86aswathyseb2024-09-28 03:10Zero counts for haplotypes
- Issue comment#78Soymethylation2024-09-06 05:16Error in using phaser_gene_ae.py
- Issue#85netwon1232024-07-22 02:31Error in phaser_gene_ae.py
- Issue comment#78netwon1232024-07-22 00:52Error in using phaser_gene_ae.py
- Issue#84chrbianchini2024-07-18 11:12Issue in function split_read
- Issue comment#83secastel2024-07-14 19:00phaser_cis_var.py
- Issue#83secastel2024-07-14 19:00phaser_cis_var.py
- Issue comment#81secastel2024-07-14 18:26phaser annotate module is still py2.7?
- Issue#83Yang-Yingshan2024-07-09 07:40phaser_cis_var.py
- Issue comment#81FunongLuo2024-06-30 14:50phaser annotate module is still py2.7?
- Issue comment#81FunongLuo2024-06-30 14:43phaser annotate module is still py2.7?
- Issue comment#82secastel2024-06-16 18:38Recommendations for running phaser with just the rnaseq data
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 31 stars here means stars gained during the window, not the repo's star count.