Allo: a multi-mapped read rescue strategy for peak based gene regulatory analyses
active 2023-08-29 → 2025-06-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 667 days from 2023-08-29 to 2025-06-25. Pushes: 24 total, peak 9 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 10 total, peak 2 in a day. Comments: 9 total, peak 3 in a day. Stars: 19 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| anmorrissey | 32 | 23 | 0 | 6 |
| KeyiG | 5 | 0 | 0 | 3 |
| QianhuiWan | 2 | 0 | 0 | 0 |
| yt619 | 1 | 0 | 0 | 0 |
| shaunmahony | 1 | 1 | 0 | 0 |
| pdexheimer | 1 | 0 | 0 | 0 |
| francicco | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#6yt6192024-12-02 11:41Can Allo be used for transcriptome expression calculation in polyploid genome (haplotype-resolved)？
- Issue#5QianhuiWan2024-10-17 20:32Does the allo package work for WGBS data?
- Issue#2anmorrissey2024-10-01 15:33Numpy problem
- Issue#4anmorrissey2024-10-01 15:33Use allo before or after deduplication
- Issue comment#4anmorrissey2024-09-30 18:53Use allo before or after deduplication
- Issue#4QianhuiWan2024-09-30 18:47Use allo before or after deduplication
- Issue comment#2anmorrissey2024-09-05 00:27Numpy problem
- Issue comment#3anmorrissey2024-09-05 00:24Conda dependencies are broken?
- Issue#3anmorrissey2024-09-05 00:24Conda dependencies are broken?
- Releaseanmorrissey2024-09-05 00:03Allo v1.2.0
- Issue comment#3anmorrissey2024-08-26 15:43Conda dependencies are broken?
- Issue#3pdexheimer2024-08-22 18:06Conda dependencies are broken?
- Issue#2francicco2024-08-22 11:59Numpy problem
- Releaseanmorrissey2024-08-05 17:53Allo v1.1.2
- Issue#1KeyiG2024-07-31 07:15Could not load Tensorflow model
- Issue comment#1KeyiG2024-07-31 07:14Could not load Tensorflow model
- Issue comment#1anmorrissey2024-07-30 16:29Could not load Tensorflow model
- Issue comment#1KeyiG2024-07-22 14:48Could not load Tensorflow model
- Issue comment#1anmorrissey2024-07-22 13:21Could not load Tensorflow model
- Issue comment#1KeyiG2024-07-22 12:43Could not load Tensorflow model
- Issue#1KeyiG2024-07-17 12:23Could not load Tensorflow model
- Releaseanmorrissey2024-05-09 21:42Allo v1.1.1
- Releaseanmorrissey2024-05-09 21:28v1.1.0
- Releaseanmorrissey2023-09-06 20:28Allo v1.0.4
- Releaseanmorrissey2023-09-06 20:17Allo v1.0.3
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 19 stars here means stars gained during the window, not the repo's star count.