Proseg nextflow pipeline for Cirro
active 2024-05-07 → 2025-07-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 449 days from 2024-05-07 to 2025-07-29. Pushes: 39 total, peak 9 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 3 in a day. Comments: 8 total, peak 4 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue#7derrik-gratz2025-07-24 22:26Proseg now available as an nf-core module
- Issue comment#6tjbencomo2025-02-27 07:26Proseg v1 vs v2
- Issue comment#6sagar872025-02-26 14:22Proseg v1 vs v2
- Issue#6sagar872025-02-26 14:22Proseg v1 vs v2
- Issue comment#6tjbencomo2025-02-21 05:49Proseg v1 vs v2
- Releasetjbencomo2024-09-17 22:57Version 1.0.5
- Releasetjbencomo2024-05-29 21:22Version 1.0.4
- Releasetjbencomo2024-05-28 18:39Version 1.0.3
- Releasetjbencomo2024-05-15 21:18Version 1.0.2
- Releasetjbencomo2024-05-15 19:51Fix ignore_z_coordinate issue
- Issue#5tjbencomo2024-05-15 19:43Force Cirro to use a specific version
- Releasetjbencomo2024-05-15 18:59Version 1.0.0
- Issue comment#3tjbencomo2024-05-15 18:58Add more control over settings
- Issue#3tjbencomo2024-05-15 18:58Add more control over settings
- Issue comment#4tjbencomo2024-05-15 18:57Enforce pattern matching for transcripts input file
- Issue#4tjbencomo2024-05-15 18:57Enforce pattern matching for transcripts input file
- Issue comment#1tjbencomo2024-05-15 01:44Support CosMx stiching
- Issue comment#3tjbencomo2024-05-15 01:26Add more control over settings
- Issue#4tjbencomo2024-05-09 22:06Enforce pattern matching for transcripts input file
- Issue#3tjbencomo2024-05-09 19:34Add more control over settings
- Issue#2tjbencomo2024-05-07 21:18Cirro Visualization
- Issue#1tjbencomo2024-05-07 21:16Support CosMx stiching
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.