Convert bioinformatics file formats to Zarr
active 2024-03-28 → 2026-08-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 867 days from 2024-03-28 to 2026-08-11. Pushes: 156 total, peak 8 in a day. Pull requests: 299 total, peak 14 in a day. Issues: 265 total, peak 17 in a day. Comments: 721 total, peak 23 in a day. Stars: 32 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| jeromekelleher | 974 | 124 | 219 | 331 |
| benjeffery | 214 | 9 | 41 | 116 |
| coveralls | 131 | 0 | 0 | 131 |
| tomwhite | 112 | 4 | 21 | 55 |
| Will-Tyler | 46 | 0 | 8 | 31 |
| github-merge-queue[bot] | 19 | 19 | 0 | 0 |
| hyanwong | 18 | 0 | 0 | 13 |
| ravwojdyla | 14 | 0 | 5 | 8 |
| percyfal | 11 | 0 | 1 | 8 |
| moshejasper | 8 | 0 | 0 | 7 |
| timothymillar | 7 | 0 | 0 | 5 |
| pmoris | 6 | 0 | 0 | 5 |
| kuisu-GDUT | 3 | 0 | 0 | 1 |
| duncanMR | 3 | 0 | 0 | 0 |
| rajwanir | 3 | 0 | 0 | 1 |
| dependabot[bot] | 3 | 0 | 3 | 0 |
| ACEnglish | 2 | 0 | 1 | 1 |
| hammer | 2 | 0 | 0 | 1 |
| shz9 | 2 | 0 | 0 | 1 |
| no7ren | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#496dependabot[bot]2026-07-01 22:16
- Pull request#485dependabot[bot]2026-05-02 01:45
- Pull request#485dependabot[bot]2026-05-02 01:45
- Issue comment#483tomwhite2026-04-24 10:42Add a --zarr-format CLI option
- Issue comment#464jeromekelleher2026-04-02 11:14Create empty genotype arrays when there are no samples
- Pull request#461jeromekelleher2026-04-02 09:40
- Issue#458jeromekelleher2026-04-01 13:23Update tests to support xarray >= 2025.03.1
- Issue comment#453coveralls2026-03-02 15:20Update CHANGELOG for 0.1.8 release
- Issue#452hyanwong2026-02-24 22:36vcf2zarr with multiple VCFs: do positions need to be identical?
- Pull request#451jeromekelleher2026-02-16 13:25
- Issue#276tomwhite2026-02-16 11:57Inspect fails for datasets with out consolidated metadata
- Pull request#450tomwhite2026-02-16 11:57
- Issue comment#450coveralls2026-02-16 10:20Remove consolidated metadata
- Pull request#445jeromekelleher2026-02-10 16:28
- Issue#447jeromekelleher2026-02-10 15:09Use Zarr v3 best practises and remove warnings
- Issue#446jeromekelleher2026-02-10 15:07Drop "dimension_separator" from API
- Issue#440hyanwong2026-02-03 23:04Fix vcz deprecation warning for variant_length
- Issue comment#438coveralls2026-02-03 12:01Update changelog for 0.1.7
- Issue comment#437AngieHinrichs2026-02-03 01:36Conversion of 1000 genomes vcf to zarr error?
- Issue#437cmdcolin2026-02-02 14:29Conversion of 1000 genomes vcf to zarr error?
- Pull request#420tomwhite2026-01-12 10:57
- Issue#424jeromekelleher2026-01-08 13:16Update for tskit 1.0
- Issue comment#420coveralls2026-01-08 13:13Changes to work with Zarr format v3
- Issue#431tomwhite2026-01-06 16:14Run CI on a regular schedule
- Issue comment#431tomwhite2026-01-06 16:14Run CI on a regular schedule
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 32 stars here means stars gained during the window, not the repo's star count.