A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
active 2023-08-15 → 2026-07-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1059 days from 2023-08-15 to 2026-07-08. Pushes: 132 total, peak 5 in a day. Pull requests: 34 total, peak 3 in a day. Issues: 210 total, peak 13 in a day. Comments: 399 total, peak 13 in a day. Stars: 425 total, peak 6 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| shenwei356 | 445 | 130 | 15 | 237 |
| jolespin | 13 | 0 | 0 | 10 |
| mbhall88 | 13 | 0 | 0 | 10 |
| kabilov | 13 | 0 | 0 | 6 |
| fgvieira | 13 | 0 | 1 | 7 |
| apcamargo | 11 | 0 | 1 | 6 |
| botond-sipos | 10 | 0 | 1 | 9 |
| stas-malavin | 10 | 0 | 0 | 5 |
| dependabot[bot] | 8 | 2 | 5 | 1 |
| avilella | 8 | 0 | 0 | 6 |
| lborcard | 6 | 0 | 0 | 4 |
| Fan-iX | 6 | 0 | 1 | 2 |
| heuermh | 5 | 0 | 0 | 3 |
| PRTGRWL | 5 | 0 | 0 | 3 |
| khalilchatoo | 5 | 0 | 3 | 1 |
| ThDef | 5 | 0 | 0 | 3 |
| ammaraziz | 5 | 0 | 0 | 4 |
| charles-plessy | 5 | 0 | 0 | 4 |
| corneliusroemer | 5 | 0 | 2 | 3 |
| 326reborn | 4 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Pull request#588meichuanyi2026-06-16 00:48
- Issue#586yudalang32026-06-02 08:30奇怪，是我打开方式错了吗？这里明明搜索得到的序列，为什么 grep 不到呢？
- Issue#582Sherry5202026-05-09 07:12[Bug] seqkit grep [ERRO] fastx: invalid FASTA/Q format
- Issue comment#582shenwei3562026-05-09 05:10[Bug] seqkit grep [ERRO] fastx: invalid FASTA/Q format
- Issue comment#578mbhall882026-04-14 22:13Filename information in fx2tab
- Issue#577ashipde2026-04-13 21:38seqkit grep / read sequence match without reverse-complementing
- Issue comment#577ashipde2026-04-13 21:38seqkit grep / read sequence match without reverse-complementing
- Issue comment#576shenwei3562026-04-08 08:20`seqkit faidx --infile-list` description is misleading
- Issue#576permia2026-04-08 07:42`seqkit faidx --infile-list` description is misleading
- Issue#575desmodus19842026-04-02 18:09Piping fx2tab to grep
- Issue#572juanjo2552026-02-13 14:56`seqkit grep` in for loop
- Issue#572juanjo2552026-02-11 19:02`seqkit grep` in for loop
- Issue#564shenwei3562026-02-11 10:21New subcommanbd: fx2gff
- Issue#418shenwei3562026-02-11 10:16[feature suggestion] Reverse translate protein search expression into nucleotide regex or degenerate base sequence
- Issue#349shenwei3562026-02-11 10:13[Feature suggestion][amplicon] primer-pair searching limit
- Issue comment#563shenwei3562026-02-09 10:19Simlify split2 prefix
- Issue#559shenwei3562026-02-05 13:35Renaming with key doesn't work
- Issue#569tseemann2026-01-24 03:14Unusual handling of TSV input with ^@
- Issue comment#568shenwei3562026-01-20 12:08Apply seqkit seq operations to specific contig
- Issue comment#567shenwei3562026-01-09 09:07Bufixes in the BAM toolbox
- Issue comment#200botond-sipos2026-01-09 07:49seqkit bam
- Issue comment#566shenwei3562026-01-04 07:58Introducing sample2: fix potential sampling bias issue and ensure deterministic `-n` behavior
- Issue comment#566stahiga2026-01-04 07:56Introducing sample2: fix potential sampling bias issue and ensure deterministic `-n` behavior
- Pull request#566stahiga2026-01-04 07:31
- Issue comment#565apcamargo2025-12-31 18:01`seqkit shuffle` is deterministic by default
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 425 stars here means stars gained during the window, not the repo's star count.