metagenome population recombination rate estimation pipeline
active 2023-11-29 → 2025-11-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 726 days from 2023-11-29 to 2025-11-23. Pushes: 31 total, peak 2 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 5 total, peak 3 in a day. Comments: 20 total, peak 8 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue comment#54koadman2025-03-26 01:52Estimating recombination rates between two populations
- Issue comment#65sid-krish2025-03-25 22:05Failed to create Conda environment: version conflicts
- Issue#65sid-krish2025-03-25 22:04Failed to create Conda environment: version conflicts
- Issue comment#64koadman2025-03-16 04:11Changes for r/m
- Pull request#64sid-krish2025-03-07 22:57
- Pull request#63sid-krish2025-03-06 03:06
- Pull request#63sid-krish2025-03-02 06:54
- Releasesid-krish2024-08-10 04:45Version 1.1.0
- Issue#62sid-krish2024-08-09 03:55The use of subprocess.Popen in pairwise_table_paired_end.py and pairwise_table_single_end.py could be an issue
- Issue#61sid-krish2024-03-19 05:29Replace use of samtools pileup?
- Issue#60sid-krish2024-03-19 04:54Subsample fraction output needs header row
- Issue#57sid-krish2024-03-19 04:48tps_mean/median_depth could be remaned for easier understanding
- Releasesid-krish2024-03-19 04:45Version 1.0.8
- Releasesid-krish2024-02-26 03:30Version 1.0.7
- Releasesid-krish2024-01-03 00:48Version 1.0.6
- Releasesid-krish2023-11-29 23:02Version 1.0.5
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.