sensitive and precise assembly of short sequencing reads
active 2023-08-24 → 2025-12-18 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 848 days from 2023-08-24 to 2025-12-18. Pushes: 12 total, peak 11 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 1 in a day. Comments: 5 total, peak 2 in a day. Stars: 37 total, peak 5 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| martin-steinegger | 8 | 8 | 0 | 0 |
| milot-mirdita | 4 | 3 | 0 | 1 |
| sav-che | 2 | 0 | 0 | 1 |
| ewaltari | 1 | 0 | 0 | 1 |
| soeding | 1 | 0 | 0 | 1 |
| timghaly | 1 | 0 | 0 | 1 |
| cv-1993 | 1 | 0 | 0 | 0 |
| Enkabloza | 1 | 0 | 0 | 0 |
| shengxiaobufu | 1 | 0 | 0 | 0 |
| SergeyBaikal | 1 | 0 | 0 | 0 |
| AnnSeidel | 1 | 1 | 0 | 0 |
| MTDouglas | 1 | 0 | 0 | 0 |
| Markusjsommer | 1 | 0 | 0 | 0 |
| aabaricalla | 1 | 0 | 0 | 0 |
| metaganal | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#55sav-che2025-07-28 13:32PenguiN for not-metagenomic assembly
- Issue comment#55soeding2025-07-28 12:59PenguiN for not-metagenomic assembly
- Issue#55sav-che2025-07-28 12:52PenguiN for not-metagenomic assembly
- Issue#54Enkabloza2025-05-02 05:45Performance recommendations for running PenguiN on high-RAM servers with HDDs
- Issue#53MTDouglas2024-12-26 21:48PenguiN Reproducibility
- Issue#52SergeyBaikal2024-12-24 04:55Manual PenguiN
- Issue#51metaganal2024-12-20 07:36Penguin performance for ITS/18S assembly and potential implementation for metagenome binning?
- Issue#50Markusjsommer2024-11-01 20:10SNPs introduced when using high --max-iterations
- Issue comment#48milot-mirdita2024-08-24 10:43Data Access
- Issue#48shengxiaobufu2024-08-24 09:50Data Access
- Issue#47cv-19932024-08-14 00:20Penguin: no assembled contigs
- Issue comment#44timghaly2024-04-16 04:50Quality trimming reads?
- Issue#45aabaricalla2024-03-31 16:46Alternative codon table
- Releasemartin-steinegger2024-03-31 11:28Plass/Penguin release 5-cf8933
- Issue comment#11ewaltari2023-08-25 01:26Incorrect headers for Nuc -> Protein
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 37 stars here means stars gained during the window, not the repo's star count.