Discovery of conserved gene clusters in multiple genomes
active 2023-08-15 → 2026-02-27 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 928 days from 2023-08-15 to 2026-02-27. Pushes: 30 total, peak 7 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 18 total, peak 2 in a day. Comments: 31 total, peak 4 in a day. Stars: 67 total, peak 7 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| RuoshiZhang | 36 | 27 | 0 | 9 |
| lalintao | 4 | 0 | 0 | 2 |
| SDmetagenomics | 3 | 0 | 0 | 2 |
| KerrinSteensen | 3 | 0 | 0 | 2 |
| Dx-wmc | 3 | 0 | 0 | 2 |
| milot-mirdita | 3 | 3 | 0 | 0 |
| ilnamkang | 3 | 0 | 0 | 1 |
| victoriaajones | 3 | 0 | 0 | 3 |
| jlingford | 2 | 0 | 0 | 1 |
| zhaorui-bi | 2 | 0 | 0 | 1 |
| SamuelSchwab | 2 | 0 | 0 | 2 |
| Fazel-AVB | 2 | 0 | 0 | 2 |
| DaRinker | 1 | 0 | 0 | 0 |
| resulelginembl | 1 | 0 | 0 | 1 |
| neptuneyt | 1 | 0 | 0 | 0 |
| BinhongLiu | 1 | 0 | 0 | 0 |
| BaconDavid | 1 | 0 | 0 | 1 |
| DUANZIHAOO | 1 | 0 | 0 | 0 |
| abrozzi | 1 | 0 | 0 | 0 |
| mwittep | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#22Xiewentao172026-02-27 04:11Bug Report: Can not allocate entries memory in IndexTable::initMemory persists regardless of available memory and --split settings
- Issue comment#15BaconDavid2026-01-16 08:10comparison accuracy of "spacedust clustersearch" decreases significantly when the targetdb increases
- Issue#20BinhongLiu2025-12-30 11:35step-by-step scripts for the example data
- Issue comment#17lalintao2025-12-24 07:45Problem of --cluster-size 1
- Issue#18jlingford2025-12-08 07:12Error: gff2db failed
- Issue comment#4jlingford2025-12-08 04:14Not enough GFF files are provided. Some results might be omitted Error: gff2db failed
- Issue#15DUANZIHAOO2025-11-14 14:54comparison accuracy of "spacedust clustersearch" decreases significantly when the targetdb increases
- Issue comment#12lalintao2025-11-09 08:58Reduction of redundancy in gene clusters
- Issue#12lalintao2025-11-09 08:39Reduction of redundancy in gene clusters
- Issue#12lalintao2025-11-09 08:39Reduction of redundancy in gene clusters
- Issue comment#13RuoshiZhang2025-11-04 08:57No datafile could be found for /Database/FoldSeekDB/PDB100_member_to_set!
- Issue#14neptuneyt2025-11-01 09:59How can I create a custom reference database
- Issue comment#11zhaorui-bi2025-10-08 15:15Whether spacedust supports MMseqs2-GPU version？
- Issue#11zhaorui-bi2025-10-08 15:08Whether spacedust supports MMsequs2-GPU version？
- Issue#10Shild942025-10-07 15:06Cant find the Google Colab notebook in the paper
- Issue comment#7RuoshiZhang2025-10-07 08:35"Clusterhits failed. Invalid query lookup record." with .fna and .gff3 files from NCBI
- Issue comment#7victoriaajones2025-10-06 21:58"Clusterhits failed. Invalid query lookup record." with .fna and .gff3 files from NCBI
- Issue comment#7RuoshiZhang2025-10-06 21:18"Clusterhits failed. Invalid query lookup record." with .fna and .gff3 files from NCBI
- Issue comment#7victoriaajones2025-10-06 20:59"Clusterhits failed. Invalid query lookup record." with .fna and .gff3 files from NCBI
- Issue comment#7victoriaajones2025-10-06 20:55"Clusterhits failed. Invalid query lookup record." with .fna and .gff3 files from NCBI
- Issue#9DaRinker2025-09-30 16:28[Question] Paper doesn't mention fungal genomes--any reason it shouldn't work?
- Issue comment#8ilnamkang2025-09-17 00:54Is it possible to perform a search only on a specific gene cluster or region in the query genome?
- Issue#8ilnamkang2025-09-17 00:54Is it possible to perform a search only on a specific gene cluster or region in the query genome?
- Issue#8ilnamkang2025-09-16 04:49Is it possible to perform a search only on a specific gene cluster or region in the query genome?
- Issue comment#4SamuelSchwab2025-07-11 14:54Not enough GFF files are provided. Some results might be omitted Error: gff2db failed
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 67 stars here means stars gained during the window, not the repo's star count.