Simultaneous multi-sample transcript assembler for RNA-seq data
active 2023-08-15 → 2025-12-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 864 days from 2023-08-15 to 2025-12-25. Pushes: 2 total, peak 1 in a day. Pull requests: 9 total, peak 3 in a day. Issues: 10 total, peak 2 in a day. Comments: 49 total, peak 13 in a day. Stars: 4 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mbeavitt | 30 | 0 | 8 | 22 |
| mourisl | 19 | 2 | 1 | 13 |
| JohnUrban | 6 | 0 | 0 | 5 |
| cynthiawebster | 4 | 0 | 0 | 4 |
| sanyalab | 3 | 0 | 0 | 1 |
| lefterov | 2 | 0 | 0 | 1 |
| sagnikbanerjee15 | 2 | 0 | 0 | 1 |
| tcashby | 1 | 0 | 0 | 1 |
| dgodin19 | 1 | 0 | 0 | 0 |
| Somatogenomics | 1 | 0 | 0 | 1 |
| edugenetico | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#46mourisl2025-03-20 05:21Not an issue but a question
- Issue#46sanyalab2025-03-20 04:39Not an issue but a question
- Issue comment#19Somatogenomics2025-02-09 06:06Segmenation fault when using add-genename script
- Issue comment#44JohnUrban2025-01-14 18:06Combining IsoSeq long reads with stranded (rf) short reads.
- Issue comment#44mbeavitt2025-01-14 16:27Combining IsoSeq long reads with stranded (rf) short reads.
- Issue comment#44JohnUrban2025-01-14 16:17Combining IsoSeq long reads with stranded (rf) short reads.
- Issue comment#44JohnUrban2025-01-14 16:02Combining IsoSeq long reads with stranded (rf) short reads.
- Issue comment#44JohnUrban2025-01-14 14:35Combining IsoSeq long reads with stranded (rf) short reads.
- Issue comment#41mbeavitt2025-01-13 17:43Low complexity read filtering step in FindJunctions.cpp is broken for long reads
- Pull request#45mbeavitt2025-01-13 17:36
- Issue comment#44mbeavitt2025-01-13 09:46Combining IsoSeq long reads with stranded (rf) short reads.
- Issue#44JohnUrban2025-01-10 15:39Combining IsoSeq long reads with stranded (rf) short reads.
- Issue comment#43mourisl2024-12-29 19:21How does Psiclass generate the psiclass_vote.gtf file?
- Issue comment#43mbeavitt2024-12-29 16:31How does Psiclass generate the psiclass_vote.gtf file?
- Issue#43dgodin192024-12-29 06:50How does Psiclass generate the psiclass_vote.gtf file?
- Issue#41mourisl2024-12-13 03:16Low complexity read filtering step in FindJunctions.cpp is broken for long reads
- Issue#41mourisl2024-12-13 03:16Low complexity read filtering step in FindJunctions.cpp is broken for long reads
- Pull request#42mourisl2024-12-13 03:16
- Issue comment#41mbeavitt2024-12-12 17:53Low complexity read filtering step in FindJunctions.cpp is broken for long reads
- Issue comment#41mbeavitt2024-12-12 17:49Low complexity read filtering step in FindJunctions.cpp is broken for long reads
- Pull request#42mbeavitt2024-12-10 17:00
- Issue comment#40mbeavitt2024-12-05 12:00Bugfixes (mostly for ARM compatibility) and long read test data
- Pull request#40mbeavitt2024-12-05 11:59
- Pull request#39mbeavitt2024-11-27 09:15
- Issue comment#39mbeavitt2024-11-27 09:15Added missing default return value for IsGCRich function
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 4 stars here means stars gained during the window, not the repo's star count.