Tools for working with biological sequence databases in R
active 2024-01-17 → 2026-05-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 857 days from 2024-01-17 to 2026-05-22. Pushes: 16 total, peak 3 in a day. Pull requests: 19 total, peak 4 in a day. Issues: 23 total, peak 4 in a day. Comments: 4 total, peak 3 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| stitam | 62 | 16 | 19 | 4 |
Recent activity
Latest issues, pull requests and releases
- Issue#109stitam2025-11-21 12:45Cannot recover the URL of an article even though it exists
- Issue#108stitam2025-11-21 12:44ncbi_recover_id() should not recover pubmed urls
- Issue#106stitam2025-10-29 06:13ncbi_get_uid() unexpected behaviour
- Issue#104stitam2025-10-24 12:07Add vignette
- Pull request#103stitam2025-10-24 12:03
- Issue#101stitam2025-08-29 11:07ena_query() broken
- Pull request#102stitam2025-08-29 11:07
- Issue#99stitam2025-05-09 06:12Better error messages for ncbi_download_genome()
- Issue#92stitam2025-01-05 11:38Metadata parsing fails for some BioSamples
- Issue#91stitam2025-01-05 11:26More informative verbose messages for ncbi_parse()
- Issue#64stitam2024-12-26 19:30Extract antibiograms
- Pull request#90stitam2024-12-26 19:29
- Pull request#90stitam2024-12-26 19:24
- Pull request#89stitam2024-12-22 21:44
- Pull request#89stitam2024-12-22 21:32
- Pull request#84stitam2024-09-24 19:01
- Pull request#86stitam2024-08-21 21:06
- Issue#79stitam2024-08-21 20:05Should ncbi_link_uid() return a named list instead of a tibble?
- Pull request#81stitam2024-07-19 20:15
- Pull request#81stitam2024-07-19 19:50
- Issue#77stitam2024-06-25 06:06Retrieve protein sequences from UniProt
- Issue#71stitam2024-03-13 07:14AllTheBacteria
- Pull request#69stitam2024-02-18 20:40
- Issue comment#35stitam2024-02-17 20:26Remove functions that parse_gb_header()
- Issue#35stitam2024-02-17 20:26Remove functions that parse_gb_header()
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.