Multi-omic single-cell optimal transport tools
active 2023-08-15 → 2026-07-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1071 days from 2023-08-15 to 2026-07-20. Pushes: 905 total, peak 25 in a day. Pull requests: 230 total, peak 12 in a day. Issues: 210 total, peak 9 in a day. Comments: 665 total, peak 20 in a day. Stars: 103 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| MUCDK | 793 | 177 | 63 | 267 |
| selmanozleyen | 406 | 208 | 41 | 89 |
| ArinaDanilina | 304 | 189 | 57 | 16 |
| pre-commit-ci[bot] | 261 | 228 | 33 | 0 |
| giovp | 209 | 61 | 15 | 87 |
| codecov[bot] | 76 | 0 | 0 | 76 |
| Marius1311 | 69 | 2 | 10 | 37 |
| ilan-gold | 54 | 37 | 3 | 8 |
| michalk8 | 21 | 0 | 0 | 15 |
| LeonStadelmann | 12 | 1 | 8 | 2 |
| DruncBread | 11 | 0 | 0 | 8 |
| L-traveling | 9 | 0 | 0 | 6 |
| tracy666 | 9 | 0 | 0 | 5 |
| yuling999666 | 8 | 0 | 0 | 7 |
| matthieuheitz | 6 | 0 | 0 | 4 |
| pooji-96 | 4 | 0 | 0 | 3 |
| Xian123123123 | 4 | 0 | 0 | 3 |
| losechester | 4 | 0 | 0 | 3 |
| mbensouda | 4 | 0 | 0 | 3 |
| patrickCNMartin | 3 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#834batalha232026-02-05 13:47BirthDeathProblem.solve Error: tp1[8, 9].set_graph_xy(dfs[8, 9].astype("float"), t=100.0)
- Issue comment#691HarryZhang12242025-12-12 17:34Unbalance FGW full rank marginal normalization issue
- Issue comment#839MUCDK2025-11-19 15:07udpate ott-jax
- Issue comment#838tweagles12025-11-15 17:32Installation issue: cannot import name 'datasets' from 'ott.neural'
- Issue#836jdhindsa1232025-09-23 18:40Question regarding best practices with moscot vs moscot kernel in CellRank 2
- Issue#836jdhindsa1232025-08-28 14:28Question regarding best practices with moscot and CellRank 2
- Issue comment#834Yulab20222025-07-30 12:47BirthDeathProblem.solve Error: tp1[8, 9].set_graph_xy(dfs[8, 9].astype("float"), t=100.0)
- Issue comment#834Yulab20222025-07-29 15:24BirthDeathProblem.solve Error: tp1[8, 9].set_graph_xy(dfs[8, 9].astype("float"), t=100.0)
- Issue comment#834MUCDK2025-07-26 17:46BirthDeathProblem.solve Error: tp1[8, 9].set_graph_xy(dfs[8, 9].astype("float"), t=100.0)
- Issue comment#820MUCDK2025-07-15 11:33How to limit the memory usage of `.translate`?
- Issue#820MUCDK2025-07-15 11:33How to limit the memory usage of `.translate`?
- Issue#831MUCDK2025-07-15 11:33Problem loading after updated AnnData
- Issue comment#650selmanozleyen2025-07-09 09:31SinkhornProblem star policy wrong problem order
- ReleaseMUCDK2025-07-01 12:22jax update
- Issue comment#813MUCDK2025-06-30 15:42Make the optional dependency "neural" really optional
- Issue#813MUCDK2025-06-30 15:42Make the optional dependency "neural" really optional
- Issue#830MUCDK2025-06-30 15:36current moscot release is not compatible with Jax 0.6.1
- Pull request#833MUCDK2025-06-30 15:36
- Issue comment#831MUCDK2025-06-30 06:59Problem loading after updated AnnData
- Issue comment#833MUCDK2025-06-30 06:48Fix jax version and neural
- Pull request#833LeonStadelmann2025-06-29 15:19
- Issue#825MUCDK2025-06-27 07:37Error using star policy in SinkhornProblem tutorial
- Issue#832MUCDK2025-06-27 07:37Fixes of moscot code
- Issue#831WeilerP2025-06-25 12:47Problem loading after updated AnnData
- Issue comment#820YiweiNiu2025-06-20 11:06How to limit the memory usage of `.translate`?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 103 stars here means stars gained during the window, not the repo's star count.