modular k-mer count matrix and Bloom filter construction for large read collections
active 2023-08-22 → 2026-06-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1040 days from 2023-08-22 to 2026-06-26. Pushes: 23 total, peak 5 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 32 total, peak 5 in a day. Comments: 31 total, peak 4 in a day. Stars: 27 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| tlemane | 37 | 23 | 2 | 6 |
| dosshra | 6 | 0 | 0 | 4 |
| Louis-MG | 5 | 0 | 0 | 2 |
| nikostr | 5 | 0 | 0 | 2 |
| EricDeveaud | 4 | 0 | 0 | 1 |
| karel-brinda | 4 | 0 | 0 | 2 |
| BenMinch | 3 | 0 | 0 | 2 |
| rchikhi | 3 | 0 | 0 | 2 |
| jmattock5 | 3 | 0 | 0 | 1 |
| pierrepeterlongo | 3 | 0 | 0 | 3 |
| ptranvan | 2 | 0 | 0 | 2 |
| bsmith89 | 2 | 0 | 0 | 1 |
| snowformatics | 2 | 0 | 0 | 1 |
| shenweima | 2 | 0 | 0 | 0 |
| HadInotseenthesun | 2 | 0 | 0 | 0 |
| szachn-u | 1 | 0 | 0 | 0 |
| bwlang | 1 | 0 | 0 | 1 |
| hl-xue | 1 | 0 | 0 | 0 |
| zhangwenda0518 | 1 | 0 | 0 | 0 |
| MorillonLab | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#48bwlang2026-02-22 20:52Bam support
- Issue comment#48rchikhi2026-02-20 11:58Bam support
- Issue#47zhangwenda05182026-01-15 12:10IOError - No files found for these parameters.
- Releasegithub-actions[bot]2025-12-13 08:21Release v1.5.0
- Pull request#45tlemane2025-12-13 08:08
- Pull request#45tlemane2025-12-12 11:58
- Issue comment#43pierrepeterlongo2025-10-22 06:59Segmentation fault:SIGSEGV(11) signal
- Issue comment#43snowformatics2025-10-22 06:44Segmentation fault:SIGSEGV(11) signal
- Issue#43snowformatics2025-10-22 06:44Segmentation fault:SIGSEGV(11) signal
- Issue comment#42pierrepeterlongo2025-09-15 09:28Killed after receive Abort trap: 6:SIGABRT(6) signal
- Issue comment#42karel-brinda2025-09-14 22:06Killed after receive Abort trap: 6:SIGABRT(6) signal
- Issue#42karel-brinda2025-09-12 18:37Killed after receive Abort trap: 6:SIGABRT(6) signal
- Issue comment#42karel-brinda2025-09-12 18:33Killed after receive Abort trap: 6:SIGABRT(6) signal
- Issue comment#42pierrepeterlongo2025-09-12 07:00Killed after receive Abort trap: 6:SIGABRT(6) signal
- Issue#42karel-brinda2025-09-11 17:21Killed after receive Abort trap: 6:SIGABRT(6) signal
- Issue#29Louis-MG2025-05-07 14:08Clarification needed for kmer matrix columns
- Issue#41hl-xue2025-03-12 14:40Strandedness and Docker Image
- Issue comment#40Louis-MG2025-02-12 19:36Using the same kmtricks run for kmindex and kmdiff
- Issue comment#40tlemane2025-02-12 12:40Using the same kmtricks run for kmindex and kmdiff
- Issue#40Louis-MG2025-02-10 22:50Using the same kmtricks run for kmindex and kmdiff
- Issue comment#37BenMinch2024-10-15 21:43Killed after receive Aborted:SIGABRT(6) signal
- Issue comment#37ptranvan2024-10-15 21:32Killed after receive Aborted:SIGABRT(6) signal
- Issue comment#37BenMinch2024-10-15 21:29Killed after receive Aborted:SIGABRT(6) signal
- Issue comment#37ptranvan2024-10-15 21:28Killed after receive Aborted:SIGABRT(6) signal
- Issue comment#29Louis-MG2024-10-09 19:34Clarification needed for kmer matrix columns
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 27 stars here means stars gained during the window, not the repo's star count.