Sequencing data compression using SBWT and k-bounded matching statistics.
active 2025-07-07 → 2025-08-06 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 31 days from 2025-07-07 to 2025-08-06. Pushes: 20 total, peak 7 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 6 in a day. Comments: 2 total, peak 1 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| tmaklin | 31 | 20 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue#12tmaklin2025-08-06 16:45Assemble fastq input if a premade index is not available to encode
- Issue comment#11tmaklin2025-08-06 16:42Delta encoding with variant calling
- Issue#11tmaklin2025-08-03 09:05Delta encoding with variant calling
- Issue comment#2tmaklin2025-08-02 17:132-bit encoding for short matches
- Issue#2tmaklin2025-08-02 17:132-bit encoding for short matches
- Issue#9tmaklin2025-07-29 08:15Handle quality scores for fastq data
- Issue#8tmaklin2025-07-29 07:54Improve left extension code
- Issue#7tmaklin2025-07-29 07:51Write documentation
- Issue#6tmaklin2025-07-29 07:51Tests
- Issue#4tmaklin2025-07-29 07:50Optimal splitting strategy for choosing which matches to store
- Issue#2tmaklin2025-07-29 07:472-bit encoding for short matches
- Releasetmaklin2025-07-07 17:13Proof of concept
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.