Tools for dealing with tree sequences coming to and from SLiM.
active 2023-08-15 → 2026-06-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1046 days from 2023-08-15 to 2026-06-25. Pushes: 38 total, peak 3 in a day. Pull requests: 53 total, peak 4 in a day. Issues: 56 total, peak 4 in a day. Comments: 117 total, peak 9 in a day. Stars: 1 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| petrelharp | 144 | 31 | 30 | 43 |
| bhaller | 27 | 0 | 0 | 25 |
| codecov-commenter | 23 | 0 | 0 | 23 |
| benjeffery | 23 | 5 | 13 | 4 |
| jeromekelleher | 9 | 1 | 2 | 4 |
| ShyamieG | 7 | 0 | 0 | 3 |
| Hongjinwu | 7 | 0 | 0 | 5 |
| daikitag | 5 | 0 | 2 | 1 |
| Luker121 | 5 | 0 | 0 | 4 |
| jiseonmin | 4 | 0 | 3 | 1 |
| hyanwong | 3 | 0 | 1 | 1 |
| Sgornard | 2 | 0 | 0 | 2 |
| github-merge-queue[bot] | 1 | 1 | 0 | 0 |
| clwgg | 1 | 0 | 0 | 0 |
| trevorcousins | 1 | 0 | 0 | 0 |
| Tatianabellagio | 1 | 0 | 1 | 0 |
| lkirk | 1 | 0 | 1 | 0 |
| gregorgorjanc | 1 | 0 | 0 | 1 |
| steinrue | 1 | 0 | 0 | 0 |
| AudeCaizergues | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#421petrelharp2026-06-25 01:07Add setuptools_scm
- Issue#422petrelharp2026-03-07 06:34Add Trusted publishing on test PyPI
- Issue comment#422petrelharp2026-03-07 06:34Add Trusted publishing on test PyPI
- Issue#416jeromekelleher2026-03-06 21:22Post release
- Issue comment#391jeromekelleher2026-03-06 21:22release tasks
- Releasejeromekelleher2026-03-06 21:12Maintenance release
- Pull request#417jeromekelleher2026-03-06 21:10
- Pull request#419jeromekelleher2026-03-06 20:29
- Issue#413jeromekelleher2026-03-05 16:46Update min python to 3.11
- Issue comment#413jeromekelleher2026-03-05 16:46Update min python to 3.11
- Issue comment#411jeromekelleher2026-03-05 10:02New layout
- Issue comment#412jeromekelleher2026-03-04 20:44Annotation tests failing on windows
- Issue comment#411codecov-commenter2026-02-27 14:07New layout
- Issue#407petrelharp2025-12-20 22:20doc at https://tskit.dev/pyslim/docs/stable/tutorial.html#vacant-nodes needs a bit of work
- Issue comment#408codecov-commenter2025-12-18 23:33vacant doc fixes; closes #407
- Issue comment#407petrelharp2025-12-18 23:30doc at https://tskit.dev/pyslim/docs/stable/tutorial.html#vacant-nodes needs a bit of work
- Pull request#406hyanwong2025-12-17 06:52
- Issue comment#361bhaller2025-12-16 22:07tools for multiple chromosome
- Issue comment#361gregorgorjanc2025-12-16 20:58tools for multiple chromosome
- Issue comment#361bhaller2025-12-16 20:54tools for multiple chromosome
- Issue comment#361hyanwong2025-12-16 19:37tools for multiple chromosome
- Issue comment#405bhaller2025-12-05 02:39Choice of ancestral_Ne in pyslim.recapitate
- Issue#405akamolphat2025-12-05 01:34Choice of ancestral_Ne in pyslim.recapitate
- Issue comment#404Sgornard2025-11-17 11:49Recapitation very slow
- Issue comment#404petrelharp2025-11-12 23:46Recapitation very slow
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 1 stars here means stars gained during the window, not the repo's star count.