ARG inference and analysis utilities for pandemic-scale SARS-CoV-2 data
active 2025-11-20 → 2026-07-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 245 days from 2025-11-20 to 2026-07-22. Pushes: 19 total, peak 3 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 5 total, peak 2 in a day. Comments: 7 total, peak 2 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| jeromekelleher | 30 | 19 | 2 | 3 |
| szhan | 1 | 0 | 0 | 1 |
| hyanwong | 1 | 0 | 0 | 1 |
| benjeffery | 1 | 0 | 0 | 1 |
| codecov-commenter | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#607hyanwong2026-05-14 21:56Can't open a read-only dataset
- Issue comment#603szhan2026-04-04 09:29Use ArgInfo
- Issue comment#590jeromekelleher2026-03-09 14:50Document how to subset the viridian data
- Issue comment#602codecov-commenter2026-03-06 20:29remove redundant python version
- Issue#593jeromekelleher2026-03-05 14:03Add trusted publishing
- Pull request#596jeromekelleher2026-03-05 12:14
- Issue#571jeromekelleher2025-11-28 11:23Add sc2ts to tskit-dev projects
- Pull request#586jeromekelleher2025-11-23 14:30
- Releasejeromekelleher2025-11-21 16:24Beta release for testing
- Issue#578jeromekelleher2025-11-21 11:56Add docs build to CI
- Issue comment#578jeromekelleher2025-11-21 11:56Add docs build to CI
- Issue comment#580jeromekelleher2025-11-21 11:55Build docs in CI
- Issue#571jeromekelleher2025-11-20 13:13Add sc2ts to tskit-dev projects
- Issue#522jeromekelleher2025-11-20 13:10Dataset value to use in `run-hmm`: can we use a .vcz file?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.