Infer a tree sequence from genetic variation data.
active 2023-08-29 → 2026-06-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1033 days from 2023-08-29 to 2026-06-26. Pushes: 131 total, peak 9 in a day. Pull requests: 182 total, peak 10 in a day. Issues: 164 total, peak 7 in a day. Comments: 702 total, peak 28 in a day. Stars: 17 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| benjeffery | 418 | 42 | 87 | 194 |
| hyanwong | 332 | 0 | 37 | 203 |
| jeromekelleher | 330 | 27 | 13 | 149 |
| mergify[bot] | 158 | 58 | 44 | 32 |
| codecov[bot] | 89 | 0 | 0 | 89 |
| agladstein | 12 | 0 | 0 | 7 |
| nspope | 8 | 0 | 0 | 7 |
| duncanMR | 7 | 0 | 0 | 4 |
| frezaei98 | 5 | 0 | 0 | 2 |
| github-merge-queue[bot] | 4 | 4 | 0 | 0 |
| petrelharp | 3 | 0 | 0 | 3 |
| moshejasper | 3 | 0 | 0 | 2 |
| gregorgorjanc | 2 | 0 | 0 | 2 |
| AprilWei001 | 2 | 0 | 0 | 2 |
| Duncan-JR | 1 | 0 | 0 | 1 |
| bgyuris | 1 | 0 | 0 | 0 |
| andrewkern | 1 | 0 | 0 | 1 |
| hossam26644 | 1 | 0 | 1 | 0 |
| szhan | 1 | 0 | 0 | 0 |
| tforest | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#1186hyanwong2026-06-10 16:49Reimplement support for sites with multiple mutations
- Issue#1165jeromekelleher2026-03-30 08:08Review and improve test coverage
- Issue comment#1167gregorgorjanc2026-03-28 06:34Validate multi-ancestor approaches at scale
- Issue#1171jeromekelleher2026-03-27 21:09Harden C code
- Issue#269jeromekelleher2026-03-27 09:55Root node in real-data inferred tree sequence has huge number of children
- Issue#270jeromekelleher2026-03-27 09:55tsinfer qc script
- Pull request#1140jeromekelleher2026-03-20 14:41
- Issue comment#1140codecov[bot]2026-03-20 14:22More augment
- Pull request#1138jeromekelleher2026-03-20 11:15
- Pull request#1138jeromekelleher2026-03-20 11:09
- Issue comment#1128codecov[bot]2026-03-18 09:47Batch of misc changes
- Pull request#1123jeromekelleher2026-03-11 22:09
- Issue comment#1123codecov[bot]2026-03-11 21:56UI improvements
- Pull request#1123jeromekelleher2026-03-11 21:55
- Issue comment#1117Duncan-JR2026-03-10 09:32Tsinfer 1 design draft
- Issue comment#1114codecov[bot]2026-03-05 13:26Update the changelog for release
- Issue#1113jeromekelleher2026-03-05 13:22Post release
- Issue#1107hyanwong2026-03-03 14:00Remove references to `sgkit`
- Pull request#1101jeromekelleher2026-02-27 16:34
- Pull request#1098jeromekelleher2026-02-27 09:05
- Issue comment#1098codecov[bot]2026-02-26 17:02Use general wheel build config
- Pull request#1096jeromekelleher2026-02-24 15:25
- Pull request#1095jeromekelleher2026-02-23 15:39
- Issue comment#1073AngieHinrichs2026-02-20 22:59help debugging TSK_ERR_POPULATION_OUT_OF_BOUNDS?
- Issue comment#1094codecov[bot]2026-02-20 15:25Finalise linting
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 17 stars here means stars gained during the window, not the repo's star count.