Population-scale genomics
active 2025-01-25 → 2026-07-06 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 528 days from 2025-01-25 to 2026-07-06. Pushes: 67 total, peak 3 in a day. Pull requests: 117 total, peak 7 in a day. Issues: 216 total, peak 43 in a day. Comments: 758 total, peak 63 in a day. Stars: 14 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| benjeffery | 496 | 8 | 63 | 232 |
| petrelharp | 264 | 4 | 9 | 160 |
| jeromekelleher | 234 | 10 | 13 | 109 |
| hyanwong | 125 | 0 | 20 | 82 |
| codecov[bot] | 69 | 0 | 0 | 69 |
| github-merge-queue[bot] | 43 | 43 | 0 | 0 |
| lkirk | 41 | 0 | 2 | 23 |
| apragsdale | 27 | 0 | 0 | 20 |
| gregorgorjanc | 23 | 0 | 2 | 14 |
| bhaller | 20 | 0 | 0 | 17 |
| nspope | 8 | 0 | 0 | 5 |
| andrewkern | 7 | 0 | 0 | 5 |
| molpopgen | 7 | 0 | 0 | 7 |
| hanbin973 | 5 | 0 | 1 | 4 |
| tforest | 5 | 0 | 1 | 3 |
| mergify[bot] | 5 | 2 | 2 | 0 |
| hossam26644 | 4 | 0 | 2 | 2 |
| YunDeng98 | 2 | 0 | 0 | 1 |
| hugovk | 2 | 0 | 2 | 0 |
| qiazhua | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#3460nspope2026-05-15 03:19Correctly account for isolated samples in normalisation of `pair_coalescence_*` methods
- Issue#3451hyanwong2026-04-27 22:23draw_svg: Y-axis height bug with title
- Issue comment#3447apragsdale2026-04-15 20:59More carefully define two-locus haplotypes in docs
- Issue comment#3440petrelharp2026-04-03 17:30json+struct: padding bytes and no C code
- Issue comment#3443petrelharp2026-04-02 16:57PCA fails sometimes (maybe if nodes are not 0...n?)
- Issue comment#3441petrelharp2026-03-25 20:46nans in `ld_matrix`
- Issue comment#3442kaathewisegit2026-03-25 16:49Support `node_labels` in `write_nexus` via `TRANSLATE`
- Pull request#3439petrelharp2026-03-20 18:59
- Issue comment#3426petrelharp2026-03-18 04:37Two locus general matrix
- Issue comment#3426petrelharp2026-03-18 04:35Two locus general matrix
- Issue comment#3426lkirk2026-03-18 00:12Two locus general matrix
- Issue comment#3426lkirk2026-03-17 23:47Two locus general matrix
- Issue comment#3416petrelharp2026-03-17 00:18Documentation for LD matrix methods
- Issue#858petrelharp2026-03-16 04:09Clarify which version of Fst we compute
- Issue comment#3426lkirk2026-03-14 01:04Two locus general matrix
- Issue comment#3437petrelharp2026-03-13 18:32Json struct alignment
- Pull request#3427petrelharp2026-03-13 01:59
- Issue comment#3430hyanwong2026-03-13 00:02developer docs "copy" should copy a usable command
- Issue comment#3427bhaller2026-03-12 17:53remove consts from tsk_json_struct_metadata_get_blob (closes #3425)
- Issue#3430bhaller2026-03-12 16:17developer docs "copy" should copy a usable command
- Issue#3422jeromekelleher2026-03-10 16:22`json+struct` codec should provide stuff in the public API that is needed by clients
- Issue#3422bhaller2026-03-10 13:41`json+struct` codec should provide stuff in the public API that is needed by clients
- Issue comment#3423jeromekelleher2026-03-10 09:25`json+struct` codec should provide a memory alignment guarantee for the binary component
- Issue comment#3422jeromekelleher2026-03-10 09:20`json+struct` codec should provide stuff in the public API that is needed by clients
- Pull request#3417jeromekelleher2026-03-06 11:41
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 14 stars here means stars gained during the window, not the repo's star count.