Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
active 2023-10-20 → 2025-08-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 676 days from 2023-10-20 to 2025-08-25. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 2 in a day. Comments: 4 total, peak 1 in a day. Stars: 10 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ramirobarrantes | 4 | 0 | 0 | 1 |
| Sanrrone | 2 | 0 | 0 | 1 |
| gg0715 | 1 | 0 | 0 | 0 |
| irc47 | 1 | 0 | 0 | 0 |
| tyjo | 1 | 0 | 0 | 1 |
| talkorem | 1 | 0 | 0 | 1 |
| ykm7788 | 1 | 0 | 0 | 0 |
| Harper19 | 1 | 0 | 0 | 0 |
| GoldSquadronBombadier418 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#25irc472025-08-25 21:59Demo Data Link Not Working
- Issue#23gg07152025-08-13 08:03out.csv with no results
- Issue comment#22ramirobarrantes2024-11-07 22:36Error when doing extract: OverflowError: Python integer out of bounds
- Issue#22ramirobarrantes2024-11-07 22:36Error when doing extract: OverflowError: Python integer out of bounds
- Issue#22ramirobarrantes2024-11-07 21:22Error when doing extract: OverflowError: Python integer out of bounds
- Issue#21ramirobarrantes2024-10-29 10:42Bioconda coptr
- Issue#20ykm77882024-10-25 04:45Found complete reference genome with <500bp. This is probably due to a mislabeled contig.
- Issue comment#19talkorem2024-10-20 01:57Example data link invalid
- Issue#19GoldSquadronBombadier4182024-10-01 06:26Example data link invalid
- Issue#18Harper192024-09-04 13:34Feasibilty for long read sequencing
- Issue comment#17Sanrrone2024-03-15 12:16cm.pkl not found in extract step
- Issue comment#17tyjo2024-03-13 21:05cm.pkl not found in extract step
- Issue#17Sanrrone2024-03-13 11:18cm.pkl not found in extract step
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 10 stars here means stars gained during the window, not the repo's star count.