This workflow performs trimming, alignment, and generates BigWig and BED files for CUT&Tag data. The workflow is optimized for the HPC environment at Van Andel Institute, but it can be easily modified for general use on other systems.
active 2025-02-27 → 2025-12-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 301 days from 2025-02-27 to 2025-12-24. Pushes: 23 total, peak 4 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 5 total, peak 2 in a day. Comments: 4 total, peak 2 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| genomics-kl | 31 | 21 | 1 | 4 |
| zhen-fu | 2 | 2 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#4genomics-kl2025-03-29 08:31
- Issue#3genomics-kl2025-03-29 01:24Add rule to filter the BAM files
- Issue comment#2genomics-kl2025-03-28 18:53Add differential binding
- Issue#2genomics-kl2025-03-28 18:53Add differential binding
- Issue comment#2genomics-kl2025-03-26 06:36Add differential binding
- Issue comment#2genomics-kl2025-03-26 06:34Add differential binding
- Issue comment#1genomics-kl2025-03-25 18:42Add FRiP
- Issue#1genomics-kl2025-03-25 18:42Add FRiP
- Issue#2genomics-kl2025-03-19 02:42Add differential binding
- Issue#1genomics-kl2025-03-19 02:41Add FRiP
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.