snakemake workflow for bulk RNA-seq workflow using STAR-edgeR
active 2023-08-17 → 2026-07-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1059 days from 2023-08-17 to 2026-07-10. Pushes: 113 total, peak 13 in a day. Pull requests: 37 total, peak 4 in a day. Issues: 17 total, peak 2 in a day. Comments: 54 total, peak 4 in a day. Stars: 4 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| genomics-kl | 113 | 66 | 12 | 22 |
| kew24 | 53 | 20 | 8 | 15 |
| RFillinger | 28 | 8 | 5 | 11 |
| zhen-fu | 25 | 6 | 11 | 4 |
| dfbautista | 15 | 10 | 1 | 2 |
| ianbed | 2 | 2 | 0 | 0 |
| Copilot | 2 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#57RFillinger2026-05-01 19:54
- Issue comment#57RFillinger2026-03-27 21:51Added covariate modelling in DESeq2 formula and PCA plots.
- Pull request#57RFillinger2026-02-27 21:26
- Pull request#54kew242026-01-16 21:42
- Issue#42genomics-kl2025-10-26 04:19logs/ std out files not
- Pull request#53kew242025-10-23 17:32
- Pull request#52zhen-fu2025-05-30 19:08
- Pull request#52zhen-fu2025-05-30 19:08
- Issue comment#27kew242025-05-29 20:13Integrate GSEA into the pipeline
- Issue#27kew242025-05-29 20:13Integrate GSEA into the pipeline
- Pull request#49kew242025-05-29 18:16
- Issue#51genomics-kl2025-05-28 23:26Add note to report
- Issue#44genomics-kl2025-05-28 23:22Automatically add 'ignoreTxVersion=TRUE' to tximport call if needed
- Pull request#50genomics-kl2025-05-28 05:12
- Issue comment#49kew242025-05-27 21:01deseq styling
- Issue comment#49kew242025-05-27 20:39deseq styling
- Pull request#48zhen-fu2025-05-21 19:02
- Pull request#48zhen-fu2025-05-21 19:00
- Pull request#47genomics-kl2025-05-20 14:43
- Issue comment#47zhen-fu2025-05-20 14:34simple index page
- Pull request#47zhen-fu2025-05-19 17:51
- Pull request#43RFillinger2025-05-15 19:58
- Pull request#45kew242025-05-15 18:35
- Pull request#46genomics-kl2025-05-15 18:27
- Issue comment#45kew242025-05-15 18:17DESeq2 updates
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 4 stars here means stars gained during the window, not the repo's star count.