A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
active 2023-08-17 → 2026-05-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1016 days from 2023-08-17 to 2026-05-28. Pushes: 105 total, peak 4 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 22 total, peak 3 in a day. Comments: 32 total, peak 7 in a day. Stars: 5 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| vmikk | 126 | 105 | 0 | 17 |
| splaisan | 19 | 0 | 0 | 9 |
| principezinho | 7 | 0 | 0 | 3 |
| XaviRoijals | 3 | 0 | 0 | 1 |
| hadawson | 2 | 0 | 0 | 1 |
| valentinetienne92 | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#15vmikk2025-12-19 07:25Issue with test data
- Issue comment#15vmikk2025-12-16 10:21Issue with test data
- Issue#14vmikk2025-11-09 17:19Setting multiple taxonomic groups fails at runtime
- Issue comment#14vmikk2025-11-04 12:44Setting multiple taxonomic groups fails at runtime
- Issue comment#13hadawson2025-11-01 03:05Running with ITS region set to ITS1_5.8S_ITS2 fails on documentation step
- Issue#13vmikk2025-10-27 09:54Running with ITS region set to ITS1_5.8S_ITS2 fails on documentation step
- Issue#14hadawson2025-10-26 16:44Setting multiple taxonomic groups fails at runtime
- Issue comment#12vmikk2025-10-24 08:29Inconsistent read counts and duplicated OTUs during tag-jump filtering in NextITS
- Issue comment#12valentinetienne922025-10-24 07:01Inconsistent read counts and duplicated OTUs during tag-jump filtering in NextITS
- Issue comment#12vmikk2025-10-22 08:08Inconsistent read counts and duplicated OTUs during tag-jump filtering in NextITS
- Issue#12vmikk2025-10-21 10:56Inconsistent read counts and duplicated OTUs during tag-jump filtering in NextITS
- Issue#12valentinetienne922025-10-21 06:12Inconsistent read counts and duplicated OTUs during tag-jump filtering in NextITS
- Issue comment#5splaisan2025-06-17 11:37secondary analysis
- Issue comment#5splaisan2025-06-17 07:22secondary analysis
- Issue#1splaisan2025-06-12 11:52Q about asymetrical barcodes
- Issue comment#11splaisan2025-06-12 11:43step2 failing after successful step1
- Issue comment#2vmikk2025-06-12 11:15test run not working
- Issue comment#11splaisan2025-06-12 09:32step2 failing after successful step1
- Issue#10splaisan2025-06-11 09:11possible typo in doc
- Issue#9splaisan2025-06-10 13:26issue with chimera database in latest version 1.0.0
- Releasevmikk2025-03-24 08:431.0.0
- Issue#8principezinho2025-02-17 05:26prep_seqtab not running when reproducing closed issue #3
- Issue comment#8principezinho2025-02-13 08:43chimera_denovo_agg not running when reproducing closed issue #3
- Issue comment#8vmikk2025-02-13 07:40chimera_denovo_agg not running when reproducing closed issue #3
- Issue comment#8principezinho2025-02-13 06:18chimera_denovo_agg not running when reproducing closed issue #3
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 5 stars here means stars gained during the window, not the repo's star count.